Gene : Sobic.001G390500 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10343//PTHR10343:SF55 - 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT // SUBFAMILY NOT NAMED Genomic Order:  4089
Name:  ? Sobic.001G390500 Secondary Identifier:  ? PAC:37944913
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G390500 0.5kb upstream 0.5kb upstream 7755 true Chr01: 67683160-67690914 Sorghum bicolor
Sobic.001G390500 0.5kb upstream 0.5kb upstream 500 false Chr01: 67690415-67690914 Sorghum bicolor
Sobic.001G390500 0.5kb downstream 0.5kb downstream 7755 true Chr01: 67682660-67690414 Sorghum bicolor
Sobic.001G390500 0.5kb downstream 0.5kb downstream 500 false Chr01: 67682660-67683159 Sorghum bicolor
Sobic.001G390500 1.0kb upstream 1.0kb upstream 8255 true Chr01: 67683160-67691414 Sorghum bicolor
Sobic.001G390500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 67690415-67691414 Sorghum bicolor
Sobic.001G390500 1.0kb downstream 1.0kb downstream 8255 true Chr01: 67682160-67690414 Sorghum bicolor
Sobic.001G390500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 67682160-67683159 Sorghum bicolor
Sobic.001G390500 2.0kb upstream 2.0kb upstream 9255 true Chr01: 67683160-67692414 Sorghum bicolor
Sobic.001G390500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 67690415-67692414 Sorghum bicolor
Sobic.001G390500 2.0kb downstream 2.0kb downstream 9255 true Chr01: 67681160-67690414 Sorghum bicolor
Sobic.001G390500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 67681160-67683159 Sorghum bicolor
Sobic.001G390500 5.0kb upstream 5.0kb upstream 12255 true Chr01: 67683160-67695414 Sorghum bicolor
Sobic.001G390500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 67690415-67695414 Sorghum bicolor
Sobic.001G390500 5.0kb downstream 5.0kb downstream 12255 true Chr01: 67678160-67690414 Sorghum bicolor
Sobic.001G390500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 67678160-67683159 Sorghum bicolor
Sobic.001G390500 10.0kb upstream 10.0kb upstream 17255 true Chr01: 67683160-67700414 Sorghum bicolor
Sobic.001G390500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 67690415-67700414 Sorghum bicolor
Sobic.001G390500 10.0kb downstream 10.0kb downstream 17255 true Chr01: 67673160-67690414 Sorghum bicolor
Sobic.001G390500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 67673160-67683159 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187958 5267 Panicoideae View MSA
124570321 5269 Grass View MSA
122041753 5273 Angiosperm View MSA
121345261 5274 Embryophyte View MSA
123426874 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.821       High
cufflinks 1.963       Low
cufflinks 3.075        
cufflinks 3.733        
cufflinks 3.147        
cufflinks 3.695        
cufflinks 2.479        
cufflinks 2.03       Low
cufflinks 3.45        
cufflinks 3.15        
cufflinks 2.686        
cufflinks 4.229       High
cufflinks 4.028       High
cufflinks 3.346        
cufflinks 3.496        
cufflinks 2.969        
cufflinks 2.486        
cufflinks 2.395       Low
cufflinks 3.026        
cufflinks 3.216        
cufflinks 2.687        
cufflinks 3.661        
cufflinks 3.353        
cufflinks 3.279        
cufflinks 3.072        
cufflinks 1.937       Low
cufflinks 2.447        
cufflinks 6.356       High
cufflinks 2.081       Low
cufflinks 2.993        

0 Strain