Gene : Sobic.001G449400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11685:SF119 - E3 UBIQUITIN-PROTEIN LIGASE ARI2-RELATED Genomic Order:  4713
Name:  ? Sobic.001G449400 Secondary Identifier:  ? PAC:37941606
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7511 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G449400 0.5kb upstream 0.5kb upstream 7658 true Chr01: 72649552-72657209 Sorghum bicolor
Sobic.001G449400 0.5kb upstream 0.5kb upstream 500 false Chr01: 72649552-72650051 Sorghum bicolor
Sobic.001G449400 0.5kb downstream 0.5kb downstream 7658 true Chr01: 72650052-72657709 Sorghum bicolor
Sobic.001G449400 0.5kb downstream 0.5kb downstream 500 false Chr01: 72657210-72657709 Sorghum bicolor
Sobic.001G449400 1.0kb upstream 1.0kb upstream 8158 true Chr01: 72649052-72657209 Sorghum bicolor
Sobic.001G449400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 72649052-72650051 Sorghum bicolor
Sobic.001G449400 1.0kb downstream 1.0kb downstream 8158 true Chr01: 72650052-72658209 Sorghum bicolor
Sobic.001G449400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 72657210-72658209 Sorghum bicolor
Sobic.001G449400 2.0kb upstream 2.0kb upstream 9158 true Chr01: 72648052-72657209 Sorghum bicolor
Sobic.001G449400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 72648052-72650051 Sorghum bicolor
Sobic.001G449400 2.0kb downstream 2.0kb downstream 9158 true Chr01: 72650052-72659209 Sorghum bicolor
Sobic.001G449400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 72657210-72659209 Sorghum bicolor
Sobic.001G449400 5.0kb upstream 5.0kb upstream 12158 true Chr01: 72645052-72657209 Sorghum bicolor
Sobic.001G449400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 72645052-72650051 Sorghum bicolor
Sobic.001G449400 5.0kb downstream 5.0kb downstream 12158 true Chr01: 72650052-72662209 Sorghum bicolor
Sobic.001G449400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 72657210-72662209 Sorghum bicolor
Sobic.001G449400 10.0kb upstream 10.0kb upstream 17158 true Chr01: 72640052-72657209 Sorghum bicolor
Sobic.001G449400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 72640052-72650051 Sorghum bicolor
Sobic.001G449400 10.0kb downstream 10.0kb downstream 17158 true Chr01: 72650052-72667209 Sorghum bicolor
Sobic.001G449400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 72657210-72667209 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184158 5267 Panicoideae View MSA
124575317 5269 Grass View MSA
122046859 5273 Angiosperm View MSA
121343815 5274 Embryophyte View MSA
123428000 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.522       High
cufflinks 2.474       Low
cufflinks 2.625       Low
cufflinks 3.261       Low
cufflinks 5.262        
cufflinks 6.213       High
cufflinks 4.117        
cufflinks 2.638       Low
cufflinks 7.299       High
cufflinks 7.597       High
cufflinks 4.957        
cufflinks 7.123       High
cufflinks 5.733        
cufflinks 5.349        
cufflinks 4.366        
cufflinks 3.713        
cufflinks 4.003        
cufflinks 4.261        
cufflinks 3.86        
cufflinks 5.38        
cufflinks 6.841       High
cufflinks 4.584        
cufflinks 5.602        
cufflinks 5.299        
cufflinks 3.862        
cufflinks 2.458       Low
cufflinks 4.576        
cufflinks 3.852        
cufflinks 3.579        
cufflinks 4.986        

0 Strain