Gene : Sobic.001G540000 S. bicolor v3.1.1
Defline:  (1 of 76) PF01357//PF03330 - Pollen allergen (Pollen_allerg_1) // Rare lipoprotein A (RlpA)-like double-psi beta-barrel (DPBB_1) Genomic Order:  5681
Name:  ? Sobic.001G540000 Secondary Identifier:  ? PAC:37940875
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G540000 0.5kb upstream 0.5kb upstream 1807 true Chr01: 80285730-80287536 Sorghum bicolor
Sobic.001G540000 0.5kb upstream 0.5kb upstream 500 false Chr01: 80287037-80287536 Sorghum bicolor
Sobic.001G540000 0.5kb downstream 0.5kb downstream 1807 true Chr01: 80285230-80287036 Sorghum bicolor
Sobic.001G540000 0.5kb downstream 0.5kb downstream 500 false Chr01: 80285230-80285729 Sorghum bicolor
Sobic.001G540000 1.0kb upstream 1.0kb upstream 2307 true Chr01: 80285730-80288036 Sorghum bicolor
Sobic.001G540000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 80287037-80288036 Sorghum bicolor
Sobic.001G540000 1.0kb downstream 1.0kb downstream 2307 true Chr01: 80284730-80287036 Sorghum bicolor
Sobic.001G540000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 80284730-80285729 Sorghum bicolor
Sobic.001G540000 2.0kb upstream 2.0kb upstream 3307 true Chr01: 80285730-80289036 Sorghum bicolor
Sobic.001G540000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 80287037-80289036 Sorghum bicolor
Sobic.001G540000 2.0kb downstream 2.0kb downstream 3307 true Chr01: 80283730-80287036 Sorghum bicolor
Sobic.001G540000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 80283730-80285729 Sorghum bicolor
Sobic.001G540000 5.0kb upstream 5.0kb upstream 6307 true Chr01: 80285730-80292036 Sorghum bicolor
Sobic.001G540000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 80287037-80292036 Sorghum bicolor
Sobic.001G540000 5.0kb downstream 5.0kb downstream 6307 true Chr01: 80280730-80287036 Sorghum bicolor
Sobic.001G540000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 80280730-80285729 Sorghum bicolor
Sobic.001G540000 10.0kb upstream 10.0kb upstream 11307 true Chr01: 80285730-80297036 Sorghum bicolor
Sobic.001G540000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 80287037-80297036 Sorghum bicolor
Sobic.001G540000 10.0kb downstream 10.0kb downstream 11307 true Chr01: 80275730-80287036 Sorghum bicolor
Sobic.001G540000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 80275730-80285729 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994907 5273 Angiosperm View MSA
122182056 5267 Panicoideae View MSA
124586067 5269 Grass View MSA
121265116 5274 Embryophyte View MSA
123303521 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.514        
cufflinks 0.048     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.027     Low  
cufflinks 199.193     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.065     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.004        

0 Strain