Gene : Sobic.001G527600 S. bicolor v3.1.1
Defline:  (1 of 1) 1.3.99.22 - Coproporphyrinogen dehydrogenase / Oxygen-independent coproporphyrinogen-III oxidase Genomic Order:  5546
Name:  ? Sobic.001G527600 Secondary Identifier:  ? PAC:37943272
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G527600 0.5kb upstream 0.5kb upstream 2926 true Chr01: 79164760-79167685 Sorghum bicolor
Sobic.001G527600 0.5kb upstream 0.5kb upstream 500 false Chr01: 79164760-79165259 Sorghum bicolor
Sobic.001G527600 0.5kb downstream 0.5kb downstream 2926 true Chr01: 79165260-79168185 Sorghum bicolor
Sobic.001G527600 0.5kb downstream 0.5kb downstream 500 false Chr01: 79167686-79168185 Sorghum bicolor
Sobic.001G527600 1.0kb upstream 1.0kb upstream 3426 true Chr01: 79164260-79167685 Sorghum bicolor
Sobic.001G527600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 79164260-79165259 Sorghum bicolor
Sobic.001G527600 1.0kb downstream 1.0kb downstream 3426 true Chr01: 79165260-79168685 Sorghum bicolor
Sobic.001G527600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 79167686-79168685 Sorghum bicolor
Sobic.001G527600 2.0kb upstream 2.0kb upstream 4426 true Chr01: 79163260-79167685 Sorghum bicolor
Sobic.001G527600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 79163260-79165259 Sorghum bicolor
Sobic.001G527600 2.0kb downstream 2.0kb downstream 4426 true Chr01: 79165260-79169685 Sorghum bicolor
Sobic.001G527600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 79167686-79169685 Sorghum bicolor
Sobic.001G527600 5.0kb upstream 5.0kb upstream 7426 true Chr01: 79160260-79167685 Sorghum bicolor
Sobic.001G527600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 79160260-79165259 Sorghum bicolor
Sobic.001G527600 5.0kb downstream 5.0kb downstream 7426 true Chr01: 79165260-79172685 Sorghum bicolor
Sobic.001G527600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 79167686-79172685 Sorghum bicolor
Sobic.001G527600 10.0kb upstream 10.0kb upstream 12426 true Chr01: 79155260-79167685 Sorghum bicolor
Sobic.001G527600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 79155260-79165259 Sorghum bicolor
Sobic.001G527600 10.0kb downstream 10.0kb downstream 12426 true Chr01: 79165260-79177685 Sorghum bicolor
Sobic.001G527600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 79167686-79177685 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188542 5267 Panicoideae View MSA
124588418 5269 Grass View MSA
122048362 5273 Angiosperm View MSA
121344861 5274 Embryophyte View MSA
123424755 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.414       High
cufflinks 0.047       Low
cufflinks 0.225        
cufflinks 0.317        
cufflinks 0.582        
cufflinks 0.413        
cufflinks 0.76        
cufflinks 0.121       Low
cufflinks 0.58        
cufflinks 0.63        
cufflinks 0.476        
cufflinks 0.45        
cufflinks 0.389        
cufflinks 0.38        
cufflinks 0.562        
cufflinks 0.074     Low Low
cufflinks 0.966        
cufflinks 0.964        
cufflinks 0.203        
cufflinks 0.269        
cufflinks 0.926        
cufflinks 0.68        
cufflinks 0.525        
cufflinks 0.621        
cufflinks 0.049     Low Low
cufflinks 0.029     Low Low
cufflinks 0.355        
cufflinks 1.354       High
cufflinks 1.292       High
cufflinks 0.84        

0 Strain