Gene : Sobic.001G519800 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10836:SF39 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC Genomic Order:  5464
Name:  ? Sobic.001G519800 Secondary Identifier:  ? PAC:37941751
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor CALVIN-PWY Sorghum bicolor pathologic  
Sbicolor PHOTOALL-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G519800 0.5kb upstream 0.5kb upstream 4399 true Chr01: 78562255-78566653 Sorghum bicolor
Sobic.001G519800 0.5kb upstream 0.5kb upstream 500 false Chr01: 78566154-78566653 Sorghum bicolor
Sobic.001G519800 0.5kb downstream 0.5kb downstream 4399 true Chr01: 78561755-78566153 Sorghum bicolor
Sobic.001G519800 0.5kb downstream 0.5kb downstream 500 false Chr01: 78561755-78562254 Sorghum bicolor
Sobic.001G519800 1.0kb upstream 1.0kb upstream 4899 true Chr01: 78562255-78567153 Sorghum bicolor
Sobic.001G519800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 78566154-78567153 Sorghum bicolor
Sobic.001G519800 1.0kb downstream 1.0kb downstream 4899 true Chr01: 78561255-78566153 Sorghum bicolor
Sobic.001G519800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 78561255-78562254 Sorghum bicolor
Sobic.001G519800 2.0kb upstream 2.0kb upstream 5899 true Chr01: 78562255-78568153 Sorghum bicolor
Sobic.001G519800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 78566154-78568153 Sorghum bicolor
Sobic.001G519800 2.0kb downstream 2.0kb downstream 5899 true Chr01: 78560255-78566153 Sorghum bicolor
Sobic.001G519800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 78560255-78562254 Sorghum bicolor
Sobic.001G519800 5.0kb upstream 5.0kb upstream 8899 true Chr01: 78562255-78571153 Sorghum bicolor
Sobic.001G519800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 78566154-78571153 Sorghum bicolor
Sobic.001G519800 5.0kb downstream 5.0kb downstream 8899 true Chr01: 78557255-78566153 Sorghum bicolor
Sobic.001G519800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 78557255-78562254 Sorghum bicolor
Sobic.001G519800 10.0kb upstream 10.0kb upstream 13899 true Chr01: 78562255-78576153 Sorghum bicolor
Sobic.001G519800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 78566154-78576153 Sorghum bicolor
Sobic.001G519800 10.0kb downstream 10.0kb downstream 13899 true Chr01: 78552255-78566153 Sorghum bicolor
Sobic.001G519800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 78552255-78562254 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183914 5267 Panicoideae View MSA
124578488 5269 Grass View MSA
122047323 5273 Angiosperm View MSA
121310728 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.237        
cufflinks 709.449     High High
cufflinks 217.137     High High
cufflinks 56.382     High  
cufflinks 3.728        
cufflinks 56.299     High  
cufflinks 218.897     High High
cufflinks 302.069     High High
cufflinks 1.828        
cufflinks 1.631        
cufflinks 0.122       Low
cufflinks 0.197       Low
cufflinks 4.096        
cufflinks 0.195       Low
cufflinks 26.683     High  
cufflinks 319.424     High High
cufflinks 180.263     High High
cufflinks 178.15     High High
cufflinks 164.49     High High
cufflinks 116.291     High  
cufflinks 0.799        
cufflinks 0.14       Low
cufflinks 0.087     Low Low
cufflinks 0.299       Low
cufflinks 427.129     High High
cufflinks 602.551     High High
cufflinks 0.048     Low Low
cufflinks 0.139       Low
cufflinks 85.179     High  
cufflinks 18.36     High  

0 Strain