Gene : Sobic.001G517100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10183//PTHR10183:SF323 - CALPAIN // SUBFAMILY NOT NAMED Genomic Order:  5437
Name:  ? Sobic.001G517100 Secondary Identifier:  ? PAC:37943864
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G517100 0.5kb upstream 0.5kb upstream 4600 true Chr01: 78346600-78351199 Sorghum bicolor
Sobic.001G517100 0.5kb upstream 0.5kb upstream 500 false Chr01: 78350700-78351199 Sorghum bicolor
Sobic.001G517100 0.5kb downstream 0.5kb downstream 4600 true Chr01: 78346100-78350699 Sorghum bicolor
Sobic.001G517100 0.5kb downstream 0.5kb downstream 500 false Chr01: 78346100-78346599 Sorghum bicolor
Sobic.001G517100 1.0kb upstream 1.0kb upstream 5100 true Chr01: 78346600-78351699 Sorghum bicolor
Sobic.001G517100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 78350700-78351699 Sorghum bicolor
Sobic.001G517100 1.0kb downstream 1.0kb downstream 5100 true Chr01: 78345600-78350699 Sorghum bicolor
Sobic.001G517100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 78345600-78346599 Sorghum bicolor
Sobic.001G517100 2.0kb upstream 2.0kb upstream 6100 true Chr01: 78346600-78352699 Sorghum bicolor
Sobic.001G517100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 78350700-78352699 Sorghum bicolor
Sobic.001G517100 2.0kb downstream 2.0kb downstream 6100 true Chr01: 78344600-78350699 Sorghum bicolor
Sobic.001G517100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 78344600-78346599 Sorghum bicolor
Sobic.001G517100 5.0kb upstream 5.0kb upstream 9100 true Chr01: 78346600-78355699 Sorghum bicolor
Sobic.001G517100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 78350700-78355699 Sorghum bicolor
Sobic.001G517100 5.0kb downstream 5.0kb downstream 9100 true Chr01: 78341600-78350699 Sorghum bicolor
Sobic.001G517100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 78341600-78346599 Sorghum bicolor
Sobic.001G517100 10.0kb upstream 10.0kb upstream 14100 true Chr01: 78346600-78360699 Sorghum bicolor
Sobic.001G517100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 78350700-78360699 Sorghum bicolor
Sobic.001G517100 10.0kb downstream 10.0kb downstream 14100 true Chr01: 78336600-78350699 Sorghum bicolor
Sobic.001G517100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 78336600-78346599 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026886 5273 Angiosperm View MSA
122189682 5267 Panicoideae View MSA
124466037 5269 Grass View MSA
121348180 5274 Embryophyte View MSA
123427497 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.071        
cufflinks 0.919        
cufflinks 1.547        
cufflinks 2.59       High
cufflinks 0.856        
cufflinks 3.738       High
cufflinks 0.888        
cufflinks 0.995        
cufflinks 1.262        
cufflinks 1.255        
cufflinks 0.97        
cufflinks 1.541        
cufflinks 1.025        
cufflinks 1.208        
cufflinks 1.711        
cufflinks 1.601        
cufflinks 0.821        
cufflinks 0.88        
cufflinks 1.219        
cufflinks 1.203        
cufflinks 2.759       High
cufflinks 0.776        
cufflinks 0.89        
cufflinks 0.829        
cufflinks 1.659        
cufflinks 0.812        
cufflinks 1.335        
cufflinks 0.465       Low
cufflinks 1.235        
cufflinks 1.338        

0 Strain