Gene : Sobic.001G510200 S. bicolor v3.1.1
Defline:  (1 of 9) K10251 - 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase (HSD17B12, KAR, IFA38) Genomic Order:  5366
Name:  ? Sobic.001G510200 Secondary Identifier:  ? PAC:37942506
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5080 Sorghum bicolor pathologic  
Sbicolor PWY-6433 Sorghum bicolor pathologic  
Sbicolor PWY-6598 Sorghum bicolor pathologic  
Sbicolor PWY-7036 Sorghum bicolor pathologic  
Sbicolor PWY-7601 Sorghum bicolor pathologic  
Sbicolor PWY-7606 Sorghum bicolor pathologic  
Sbicolor PWY-7619 Sorghum bicolor pathologic  
Sbicolor PWY-7726 Sorghum bicolor pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G510200 0.5kb upstream 0.5kb upstream 3008 true Chr01: 77789580-77792587 Sorghum bicolor
Sobic.001G510200 0.5kb upstream 0.5kb upstream 500 false Chr01: 77789580-77790079 Sorghum bicolor
Sobic.001G510200 0.5kb downstream 0.5kb downstream 3008 true Chr01: 77790080-77793087 Sorghum bicolor
Sobic.001G510200 0.5kb downstream 0.5kb downstream 500 false Chr01: 77792588-77793087 Sorghum bicolor
Sobic.001G510200 1.0kb upstream 1.0kb upstream 3508 true Chr01: 77789080-77792587 Sorghum bicolor
Sobic.001G510200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 77789080-77790079 Sorghum bicolor
Sobic.001G510200 1.0kb downstream 1.0kb downstream 3508 true Chr01: 77790080-77793587 Sorghum bicolor
Sobic.001G510200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 77792588-77793587 Sorghum bicolor
Sobic.001G510200 2.0kb upstream 2.0kb upstream 4508 true Chr01: 77788080-77792587 Sorghum bicolor
Sobic.001G510200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 77788080-77790079 Sorghum bicolor
Sobic.001G510200 2.0kb downstream 2.0kb downstream 4508 true Chr01: 77790080-77794587 Sorghum bicolor
Sobic.001G510200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 77792588-77794587 Sorghum bicolor
Sobic.001G510200 5.0kb upstream 5.0kb upstream 7508 true Chr01: 77785080-77792587 Sorghum bicolor
Sobic.001G510200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 77785080-77790079 Sorghum bicolor
Sobic.001G510200 5.0kb downstream 5.0kb downstream 7508 true Chr01: 77790080-77797587 Sorghum bicolor
Sobic.001G510200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 77792588-77797587 Sorghum bicolor
Sobic.001G510200 10.0kb upstream 10.0kb upstream 12508 true Chr01: 77780080-77792587 Sorghum bicolor
Sobic.001G510200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 77780080-77790079 Sorghum bicolor
Sobic.001G510200 10.0kb downstream 10.0kb downstream 12508 true Chr01: 77790080-77802587 Sorghum bicolor
Sobic.001G510200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 77792588-77802587 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995624 5273 Angiosperm View MSA
122198743 5267 Panicoideae View MSA
124589060 5269 Grass View MSA
123428985 5275 Viridiplantae View MSA
121265811 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.11        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low Low
cufflinks 0.186        
cufflinks 0.14        
cufflinks 0.173        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.073     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.138        
cufflinks 0.111        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.166        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low Low
cufflinks 0.017     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.036     Low  
cufflinks 0.24       High
cufflinks 0.047     Low  

0 Strain