Gene : Sobic.001G500600 S. bicolor v3.1.1
Defline:  (1 of 1) 5.4.99.22 - 23S rRNA pseudouridine(2605) synthase Genomic Order:  5259
Name:  ? Sobic.001G500600 Secondary Identifier:  ? PAC:37940342
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G500600 0.5kb upstream 0.5kb upstream 6426 true Chr01: 76989066-76995491 Sorghum bicolor
Sobic.001G500600 0.5kb upstream 0.5kb upstream 500 false Chr01: 76994992-76995491 Sorghum bicolor
Sobic.001G500600 0.5kb downstream 0.5kb downstream 6426 true Chr01: 76988566-76994991 Sorghum bicolor
Sobic.001G500600 0.5kb downstream 0.5kb downstream 500 false Chr01: 76988566-76989065 Sorghum bicolor
Sobic.001G500600 1.0kb upstream 1.0kb upstream 6926 true Chr01: 76989066-76995991 Sorghum bicolor
Sobic.001G500600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 76994992-76995991 Sorghum bicolor
Sobic.001G500600 1.0kb downstream 1.0kb downstream 6926 true Chr01: 76988066-76994991 Sorghum bicolor
Sobic.001G500600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 76988066-76989065 Sorghum bicolor
Sobic.001G500600 2.0kb upstream 2.0kb upstream 7926 true Chr01: 76989066-76996991 Sorghum bicolor
Sobic.001G500600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 76994992-76996991 Sorghum bicolor
Sobic.001G500600 2.0kb downstream 2.0kb downstream 7926 true Chr01: 76987066-76994991 Sorghum bicolor
Sobic.001G500600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 76987066-76989065 Sorghum bicolor
Sobic.001G500600 5.0kb upstream 5.0kb upstream 10926 true Chr01: 76989066-76999991 Sorghum bicolor
Sobic.001G500600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 76994992-76999991 Sorghum bicolor
Sobic.001G500600 5.0kb downstream 5.0kb downstream 10926 true Chr01: 76984066-76994991 Sorghum bicolor
Sobic.001G500600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 76984066-76989065 Sorghum bicolor
Sobic.001G500600 10.0kb upstream 10.0kb upstream 15926 true Chr01: 76989066-77004991 Sorghum bicolor
Sobic.001G500600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 76994992-77004991 Sorghum bicolor
Sobic.001G500600 10.0kb downstream 10.0kb downstream 15926 true Chr01: 76979066-76994991 Sorghum bicolor
Sobic.001G500600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 76979066-76989065 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184864 5267 Panicoideae View MSA
124572815 5269 Grass View MSA
122046867 5273 Angiosperm View MSA
121350601 5274 Embryophyte View MSA
123427017 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.381        
cufflinks 1.515       High
cufflinks 1.071        
cufflinks 0.953        
cufflinks 0.412        
cufflinks 1.76       High
cufflinks 1.319       High
cufflinks 1.204        
cufflinks 0.77        
cufflinks 0.809        
cufflinks 0.208       Low
cufflinks 0.293        
cufflinks 0.416        
cufflinks 0.204       Low
cufflinks 0.819        
cufflinks 1.551       High
cufflinks 1.12        
cufflinks 1.567       High
cufflinks 0.677        
cufflinks 0.979        
cufflinks 0.929        
cufflinks 0.223       Low
cufflinks 0.187       Low
cufflinks 0.194       Low
cufflinks 1.046        
cufflinks 1.246        
cufflinks 0.264        
cufflinks 0.997        
cufflinks 2.484       High
cufflinks 0.75        

0 Strain