Gene : Sobic.002G075800 S. bicolor v3.1.1
Defline:  (1 of 6) K06617 - raffinose synthase (E2.4.1.82) Genomic Order:  778
Name:  ? Sobic.002G075800 Secondary Identifier:  ? PAC:37949618
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5337 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G075800 0.5kb upstream 0.5kb upstream 4210 true Chr02: 7873937-7878146 Sorghum bicolor
Sobic.002G075800 0.5kb upstream 0.5kb upstream 500 false Chr02: 7873937-7874436 Sorghum bicolor
Sobic.002G075800 0.5kb downstream 0.5kb downstream 4210 true Chr02: 7874437-7878646 Sorghum bicolor
Sobic.002G075800 0.5kb downstream 0.5kb downstream 500 false Chr02: 7878147-7878646 Sorghum bicolor
Sobic.002G075800 1.0kb upstream 1.0kb upstream 4710 true Chr02: 7873437-7878146 Sorghum bicolor
Sobic.002G075800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 7873437-7874436 Sorghum bicolor
Sobic.002G075800 1.0kb downstream 1.0kb downstream 4710 true Chr02: 7874437-7879146 Sorghum bicolor
Sobic.002G075800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 7878147-7879146 Sorghum bicolor
Sobic.002G075800 2.0kb upstream 2.0kb upstream 5710 true Chr02: 7872437-7878146 Sorghum bicolor
Sobic.002G075800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 7872437-7874436 Sorghum bicolor
Sobic.002G075800 2.0kb downstream 2.0kb downstream 5710 true Chr02: 7874437-7880146 Sorghum bicolor
Sobic.002G075800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 7878147-7880146 Sorghum bicolor
Sobic.002G075800 5.0kb upstream 5.0kb upstream 8710 true Chr02: 7869437-7878146 Sorghum bicolor
Sobic.002G075800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 7869437-7874436 Sorghum bicolor
Sobic.002G075800 5.0kb downstream 5.0kb downstream 8710 true Chr02: 7874437-7883146 Sorghum bicolor
Sobic.002G075800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 7878147-7883146 Sorghum bicolor
Sobic.002G075800 10.0kb upstream 10.0kb upstream 13710 true Chr02: 7864437-7878146 Sorghum bicolor
Sobic.002G075800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 7864437-7874436 Sorghum bicolor
Sobic.002G075800 10.0kb downstream 10.0kb downstream 13710 true Chr02: 7874437-7888146 Sorghum bicolor
Sobic.002G075800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 7878147-7888146 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178143 5267 Panicoideae View MSA
124578254 5269 Grass View MSA
122044208 5273 Angiosperm View MSA
123429020 5275 Viridiplantae View MSA
121345613 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 413.583     High High
cufflinks 0.43        
cufflinks 1.216        
cufflinks 5.8        
cufflinks 3.383        
cufflinks 15.812     High  
cufflinks 5.716        
cufflinks 2.454        
cufflinks 17.727     High  
cufflinks 8.287        
cufflinks 0.165       Low
cufflinks 0.804        
cufflinks 1.472        
cufflinks 1.793        
cufflinks 6.166        
cufflinks 3.378        
cufflinks 6.254        
cufflinks 3.497        
cufflinks 8.229        
cufflinks 15.521     High  
cufflinks 0.066     Low Low
cufflinks 0.068     Low Low
cufflinks 1.324        
cufflinks 0.694        
cufflinks 1.183        
cufflinks 0.943        
cufflinks 16.528     High  
cufflinks 941.134     High High
cufflinks 1.617        
cufflinks 30.06     High High

0 Strain