Gene : Sobic.002G058700 S. bicolor v3.1.1
Defline:  (1 of 1) KOG0109 - RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains Genomic Order:  603
Name:  ? Sobic.002G058700 Secondary Identifier:  ? PAC:37954423
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G058700 0.5kb upstream 0.5kb upstream 10201 true Chr02: 5667143-5677343 Sorghum bicolor
Sobic.002G058700 0.5kb upstream 0.5kb upstream 500 false Chr02: 5667143-5667642 Sorghum bicolor
Sobic.002G058700 0.5kb downstream 0.5kb downstream 10201 true Chr02: 5667643-5677843 Sorghum bicolor
Sobic.002G058700 0.5kb downstream 0.5kb downstream 500 false Chr02: 5677344-5677843 Sorghum bicolor
Sobic.002G058700 1.0kb upstream 1.0kb upstream 10701 true Chr02: 5666643-5677343 Sorghum bicolor
Sobic.002G058700 1.0kb upstream 1.0kb upstream 1000 false Chr02: 5666643-5667642 Sorghum bicolor
Sobic.002G058700 1.0kb downstream 1.0kb downstream 10701 true Chr02: 5667643-5678343 Sorghum bicolor
Sobic.002G058700 1.0kb downstream 1.0kb downstream 1000 false Chr02: 5677344-5678343 Sorghum bicolor
Sobic.002G058700 2.0kb upstream 2.0kb upstream 11701 true Chr02: 5665643-5677343 Sorghum bicolor
Sobic.002G058700 2.0kb upstream 2.0kb upstream 2000 false Chr02: 5665643-5667642 Sorghum bicolor
Sobic.002G058700 2.0kb downstream 2.0kb downstream 11701 true Chr02: 5667643-5679343 Sorghum bicolor
Sobic.002G058700 2.0kb downstream 2.0kb downstream 2000 false Chr02: 5677344-5679343 Sorghum bicolor
Sobic.002G058700 5.0kb upstream 5.0kb upstream 14701 true Chr02: 5662643-5677343 Sorghum bicolor
Sobic.002G058700 5.0kb upstream 5.0kb upstream 5000 false Chr02: 5662643-5667642 Sorghum bicolor
Sobic.002G058700 5.0kb downstream 5.0kb downstream 14701 true Chr02: 5667643-5682343 Sorghum bicolor
Sobic.002G058700 5.0kb downstream 5.0kb downstream 5000 false Chr02: 5677344-5682343 Sorghum bicolor
Sobic.002G058700 10.0kb upstream 10.0kb upstream 19701 true Chr02: 5657643-5677343 Sorghum bicolor
Sobic.002G058700 10.0kb upstream 10.0kb upstream 10000 false Chr02: 5657643-5667642 Sorghum bicolor
Sobic.002G058700 10.0kb downstream 10.0kb downstream 19701 true Chr02: 5667643-5687343 Sorghum bicolor
Sobic.002G058700 10.0kb downstream 10.0kb downstream 10000 false Chr02: 5677344-5687343 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195178 5267 Panicoideae View MSA
124588129 5269 Grass View MSA
122049541 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.145        
cufflinks 1.199       Low
cufflinks 1.987        
cufflinks 2.777        
cufflinks 3.273        
cufflinks 2.365        
cufflinks 2.242        
cufflinks 1.124       Low
cufflinks 3.35        
cufflinks 3.752        
cufflinks 2.164        
cufflinks 3.507        
cufflinks 3.826       High
cufflinks 2.306        
cufflinks 3.196        
cufflinks 1.875        
cufflinks 2.497        
cufflinks 2.422        
cufflinks 2.179        
cufflinks 3.082        
cufflinks 4.955       High
cufflinks 2.25        
cufflinks 2.612        
cufflinks 2.63        
cufflinks 2.434        
cufflinks 1.176       Low
cufflinks 2.297        
cufflinks 10.785     High High
cufflinks 1.704        
cufflinks 3.334        

0 Strain