Gene : Sobic.005G216300 S. bicolor v3.1.1
Defline:  (1 of 3) K12837 - splicing factor U2AF 65 kDa subunit (U2AF2) Genomic Order:  2271
Name:  ? Sobic.005G216300 Secondary Identifier:  ? PAC:37923626
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G216300 0.5kb upstream 0.5kb upstream 5979 true Chr05: 70199080-70205058 Sorghum bicolor
Sobic.005G216300 0.5kb upstream 0.5kb upstream 500 false Chr05: 70199080-70199579 Sorghum bicolor
Sobic.005G216300 0.5kb downstream 0.5kb downstream 5979 true Chr05: 70199580-70205558 Sorghum bicolor
Sobic.005G216300 0.5kb downstream 0.5kb downstream 500 false Chr05: 70205059-70205558 Sorghum bicolor
Sobic.005G216300 1.0kb upstream 1.0kb upstream 6479 true Chr05: 70198580-70205058 Sorghum bicolor
Sobic.005G216300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 70198580-70199579 Sorghum bicolor
Sobic.005G216300 1.0kb downstream 1.0kb downstream 6479 true Chr05: 70199580-70206058 Sorghum bicolor
Sobic.005G216300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 70205059-70206058 Sorghum bicolor
Sobic.005G216300 2.0kb upstream 2.0kb upstream 7479 true Chr05: 70197580-70205058 Sorghum bicolor
Sobic.005G216300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 70197580-70199579 Sorghum bicolor
Sobic.005G216300 2.0kb downstream 2.0kb downstream 7479 true Chr05: 70199580-70207058 Sorghum bicolor
Sobic.005G216300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 70205059-70207058 Sorghum bicolor
Sobic.005G216300 5.0kb upstream 5.0kb upstream 10479 true Chr05: 70194580-70205058 Sorghum bicolor
Sobic.005G216300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 70194580-70199579 Sorghum bicolor
Sobic.005G216300 5.0kb downstream 5.0kb downstream 10479 true Chr05: 70199580-70210058 Sorghum bicolor
Sobic.005G216300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 70205059-70210058 Sorghum bicolor
Sobic.005G216300 10.0kb upstream 10.0kb upstream 15479 true Chr05: 70189580-70205058 Sorghum bicolor
Sobic.005G216300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 70189580-70199579 Sorghum bicolor
Sobic.005G216300 10.0kb downstream 10.0kb downstream 15479 true Chr05: 70199580-70215058 Sorghum bicolor
Sobic.005G216300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 70205059-70215058 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195164 5267 Panicoideae View MSA
124574359 5269 Grass View MSA
122050030 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349493 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.234     High  
cufflinks 7.121     High Low
cufflinks 13.804     High Low
cufflinks 22.701     High  
cufflinks 34.284     High  
cufflinks 22.087     High  
cufflinks 21.971     High  
cufflinks 7.023       Low
cufflinks 38.554     High  
cufflinks 37.521     High  
cufflinks 32.99     High  
cufflinks 32.655     High  
cufflinks 25.947     High  
cufflinks 31.865     High  
cufflinks 26.386     High  
cufflinks 12.034     High Low
cufflinks 21.758     High  
cufflinks 22.662     High  
cufflinks 19.036     High  
cufflinks 23.164     High  
cufflinks 46.982     High High
cufflinks 38.786     High  
cufflinks 34.515     High  
cufflinks 36.562     High  
cufflinks 13.957     High Low
cufflinks 6.197       Low
cufflinks 28.177     High  
cufflinks 13.233     High Low
cufflinks 14.428     High  
cufflinks 31.873     High  

0 Strain