Gene : Sobic.006G058100 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR11638//PTHR11638:SF96 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED Genomic Order:  612
Name:  ? Sobic.006G058100 Secondary Identifier:  ? PAC:37945592
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G058100 0.5kb upstream 0.5kb upstream 7770 true Chr06: 40432572-40440341 Sorghum bicolor
Sobic.006G058100 0.5kb upstream 0.5kb upstream 500 false Chr06: 40439842-40440341 Sorghum bicolor
Sobic.006G058100 0.5kb downstream 0.5kb downstream 7770 true Chr06: 40432072-40439841 Sorghum bicolor
Sobic.006G058100 0.5kb downstream 0.5kb downstream 500 false Chr06: 40432072-40432571 Sorghum bicolor
Sobic.006G058100 1.0kb upstream 1.0kb upstream 8270 true Chr06: 40432572-40440841 Sorghum bicolor
Sobic.006G058100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 40439842-40440841 Sorghum bicolor
Sobic.006G058100 1.0kb downstream 1.0kb downstream 8270 true Chr06: 40431572-40439841 Sorghum bicolor
Sobic.006G058100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 40431572-40432571 Sorghum bicolor
Sobic.006G058100 2.0kb upstream 2.0kb upstream 9270 true Chr06: 40432572-40441841 Sorghum bicolor
Sobic.006G058100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 40439842-40441841 Sorghum bicolor
Sobic.006G058100 2.0kb downstream 2.0kb downstream 9270 true Chr06: 40430572-40439841 Sorghum bicolor
Sobic.006G058100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 40430572-40432571 Sorghum bicolor
Sobic.006G058100 5.0kb upstream 5.0kb upstream 12270 true Chr06: 40432572-40444841 Sorghum bicolor
Sobic.006G058100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 40439842-40444841 Sorghum bicolor
Sobic.006G058100 5.0kb downstream 5.0kb downstream 12270 true Chr06: 40427572-40439841 Sorghum bicolor
Sobic.006G058100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 40427572-40432571 Sorghum bicolor
Sobic.006G058100 10.0kb upstream 10.0kb upstream 17270 true Chr06: 40432572-40449841 Sorghum bicolor
Sobic.006G058100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 40439842-40449841 Sorghum bicolor
Sobic.006G058100 10.0kb downstream 10.0kb downstream 17270 true Chr06: 40422572-40439841 Sorghum bicolor
Sobic.006G058100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 40422572-40432571 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180293 5267 Panicoideae View MSA
124581910 5269 Grass View MSA
122047694 5273 Angiosperm View MSA
121345923 5274 Embryophyte View MSA
123426532 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.383     High  
cufflinks 27.365     High Low
cufflinks 51.941     High  
cufflinks 49.841     High  
cufflinks 46.08     High  
cufflinks 45.971     High  
cufflinks 69.789     High High
cufflinks 50.775     High  
cufflinks 66.406     High High
cufflinks 55.759     High  
cufflinks 37.144     High  
cufflinks 41.12     High  
cufflinks 38.526     High  
cufflinks 40.397     High  
cufflinks 37.24     High  
cufflinks 43.236     High  
cufflinks 66.719     High High
cufflinks 81.244     High High
cufflinks 49.042     High  
cufflinks 49.906     High  
cufflinks 54.118     High  
cufflinks 40.602     High  
cufflinks 44.43     High  
cufflinks 46.159     High  
cufflinks 28.655     High Low
cufflinks 27.306     High Low
cufflinks 41.888     High  
cufflinks 74.854     High High
cufflinks 132.903     High High
cufflinks 47.063     High  

0 Strain