Gene : Sobic.002G146000 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10366//PTHR10366:SF333 - NAD DEPENDENT EPIMERASE/DEHYDRATASE // SUBFAMILY NOT NAMED Genomic Order:  1486
Name:  ? Sobic.002G146000 Secondary Identifier:  ? PAC:37951003
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-361 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G146000 0.5kb upstream 0.5kb upstream 6520 true Chr02: 29037648-29044167 Sorghum bicolor
Sobic.002G146000 0.5kb upstream 0.5kb upstream 500 false Chr02: 29043668-29044167 Sorghum bicolor
Sobic.002G146000 0.5kb downstream 0.5kb downstream 6520 true Chr02: 29037148-29043667 Sorghum bicolor
Sobic.002G146000 0.5kb downstream 0.5kb downstream 500 false Chr02: 29037148-29037647 Sorghum bicolor
Sobic.002G146000 1.0kb upstream 1.0kb upstream 7020 true Chr02: 29037648-29044667 Sorghum bicolor
Sobic.002G146000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 29043668-29044667 Sorghum bicolor
Sobic.002G146000 1.0kb downstream 1.0kb downstream 7020 true Chr02: 29036648-29043667 Sorghum bicolor
Sobic.002G146000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 29036648-29037647 Sorghum bicolor
Sobic.002G146000 2.0kb upstream 2.0kb upstream 8020 true Chr02: 29037648-29045667 Sorghum bicolor
Sobic.002G146000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 29043668-29045667 Sorghum bicolor
Sobic.002G146000 2.0kb downstream 2.0kb downstream 8020 true Chr02: 29035648-29043667 Sorghum bicolor
Sobic.002G146000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 29035648-29037647 Sorghum bicolor
Sobic.002G146000 5.0kb upstream 5.0kb upstream 11020 true Chr02: 29037648-29048667 Sorghum bicolor
Sobic.002G146000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 29043668-29048667 Sorghum bicolor
Sobic.002G146000 5.0kb downstream 5.0kb downstream 11020 true Chr02: 29032648-29043667 Sorghum bicolor
Sobic.002G146000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 29032648-29037647 Sorghum bicolor
Sobic.002G146000 10.0kb upstream 10.0kb upstream 16020 true Chr02: 29037648-29053667 Sorghum bicolor
Sobic.002G146000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 29043668-29053667 Sorghum bicolor
Sobic.002G146000 10.0kb downstream 10.0kb downstream 16020 true Chr02: 29027648-29043667 Sorghum bicolor
Sobic.002G146000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 29027648-29037647 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041043 5273 Angiosperm View MSA
122189187 5267 Panicoideae View MSA
124576364 5269 Grass View MSA
121350507 5274 Embryophyte View MSA
123428289 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low Low
cufflinks 0.022     Low Low
cufflinks 0.022     Low Low
cufflinks 0.006     Low Low
cufflinks 0.167        
cufflinks 0.059     Low  
cufflinks 1.212        
cufflinks 1.445        
cufflinks 0.276        
cufflinks 0.139        
cufflinks 15.374     High High
cufflinks 8.032       High
cufflinks 0.855        
cufflinks 9.742       High
cufflinks 0.442        
cufflinks 0.016     Low Low
cufflinks 1.158        
cufflinks 0.873        
cufflinks 0.028     Low Low
cufflinks 1.027        
cufflinks 0.053     Low  
cufflinks 2.963        
cufflinks 8.384       High
cufflinks 6.577       High
cufflinks 0.005     Low Low
cufflinks 0.013     Low Low
cufflinks 7.167       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.599        
cufflinks 0.455        

0 Strain