Gene : Sobic.006G065100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11638//PTHR11638:SF118 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPD, CHLOROPLASTIC Genomic Order:  685
Name:  ? Sobic.006G065100 Secondary Identifier:  ? PAC:37946325
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G065100 0.5kb upstream 0.5kb upstream 6786 true Chr06: 42497473-42504258 Sorghum bicolor
Sobic.006G065100 0.5kb upstream 0.5kb upstream 500 false Chr06: 42497473-42497972 Sorghum bicolor
Sobic.006G065100 0.5kb downstream 0.5kb downstream 6786 true Chr06: 42497973-42504758 Sorghum bicolor
Sobic.006G065100 0.5kb downstream 0.5kb downstream 500 false Chr06: 42504259-42504758 Sorghum bicolor
Sobic.006G065100 1.0kb upstream 1.0kb upstream 7286 true Chr06: 42496973-42504258 Sorghum bicolor
Sobic.006G065100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 42496973-42497972 Sorghum bicolor
Sobic.006G065100 1.0kb downstream 1.0kb downstream 7286 true Chr06: 42497973-42505258 Sorghum bicolor
Sobic.006G065100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 42504259-42505258 Sorghum bicolor
Sobic.006G065100 2.0kb upstream 2.0kb upstream 8286 true Chr06: 42495973-42504258 Sorghum bicolor
Sobic.006G065100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 42495973-42497972 Sorghum bicolor
Sobic.006G065100 2.0kb downstream 2.0kb downstream 8286 true Chr06: 42497973-42506258 Sorghum bicolor
Sobic.006G065100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 42504259-42506258 Sorghum bicolor
Sobic.006G065100 5.0kb upstream 5.0kb upstream 11286 true Chr06: 42492973-42504258 Sorghum bicolor
Sobic.006G065100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 42492973-42497972 Sorghum bicolor
Sobic.006G065100 5.0kb downstream 5.0kb downstream 11286 true Chr06: 42497973-42509258 Sorghum bicolor
Sobic.006G065100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 42504259-42509258 Sorghum bicolor
Sobic.006G065100 10.0kb upstream 10.0kb upstream 16286 true Chr06: 42487973-42504258 Sorghum bicolor
Sobic.006G065100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 42487973-42497972 Sorghum bicolor
Sobic.006G065100 10.0kb downstream 10.0kb downstream 16286 true Chr06: 42497973-42514258 Sorghum bicolor
Sobic.006G065100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 42504259-42514258 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041323 5273 Angiosperm View MSA
122189485 5267 Panicoideae View MSA
124582251 5269 Grass View MSA
121345985 5274 Embryophyte View MSA
123426532 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.477       Low
cufflinks 21.903     High High
cufflinks 14.563     High  
cufflinks 7.748        
cufflinks 6.685        
cufflinks 9.037        
cufflinks 12.018     High  
cufflinks 13.813     High  
cufflinks 8.015        
cufflinks 7.539        
cufflinks 9.638        
cufflinks 10.938        
cufflinks 8.525        
cufflinks 9.427        
cufflinks 9.705        
cufflinks 21.437     High High
cufflinks 11.645     High  
cufflinks 12.748     High  
cufflinks 13.088     High  
cufflinks 12.784     High  
cufflinks 4.527       Low
cufflinks 6.614        
cufflinks 8.12        
cufflinks 7.523        
cufflinks 23.597     High High
cufflinks 28.886     High High
cufflinks 6.691        
cufflinks 1.495       Low
cufflinks 9.051        
cufflinks 7.935        

0 Strain