Gene : Sobic.006G075801 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR22849//PTHR22849:SF46 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  786
Name:  ? Sobic.006G075801 Secondary Identifier:  ? PAC:37949176
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7511 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G075801 0.5kb upstream 0.5kb upstream 3142 true Chr06: 44040815-44043956 Sorghum bicolor
Sobic.006G075801 0.5kb upstream 0.5kb upstream 500 false Chr06: 44040815-44041314 Sorghum bicolor
Sobic.006G075801 0.5kb downstream 0.5kb downstream 3142 true Chr06: 44041315-44044456 Sorghum bicolor
Sobic.006G075801 0.5kb downstream 0.5kb downstream 500 false Chr06: 44043957-44044456 Sorghum bicolor
Sobic.006G075801 1.0kb upstream 1.0kb upstream 3642 true Chr06: 44040315-44043956 Sorghum bicolor
Sobic.006G075801 1.0kb upstream 1.0kb upstream 1000 false Chr06: 44040315-44041314 Sorghum bicolor
Sobic.006G075801 1.0kb downstream 1.0kb downstream 3642 true Chr06: 44041315-44044956 Sorghum bicolor
Sobic.006G075801 1.0kb downstream 1.0kb downstream 1000 false Chr06: 44043957-44044956 Sorghum bicolor
Sobic.006G075801 2.0kb upstream 2.0kb upstream 4642 true Chr06: 44039315-44043956 Sorghum bicolor
Sobic.006G075801 2.0kb upstream 2.0kb upstream 2000 false Chr06: 44039315-44041314 Sorghum bicolor
Sobic.006G075801 2.0kb downstream 2.0kb downstream 4642 true Chr06: 44041315-44045956 Sorghum bicolor
Sobic.006G075801 2.0kb downstream 2.0kb downstream 2000 false Chr06: 44043957-44045956 Sorghum bicolor
Sobic.006G075801 5.0kb upstream 5.0kb upstream 7642 true Chr06: 44036315-44043956 Sorghum bicolor
Sobic.006G075801 5.0kb upstream 5.0kb upstream 5000 false Chr06: 44036315-44041314 Sorghum bicolor
Sobic.006G075801 5.0kb downstream 5.0kb downstream 7642 true Chr06: 44041315-44048956 Sorghum bicolor
Sobic.006G075801 5.0kb downstream 5.0kb downstream 5000 false Chr06: 44043957-44048956 Sorghum bicolor
Sobic.006G075801 10.0kb upstream 10.0kb upstream 12642 true Chr06: 44031315-44043956 Sorghum bicolor
Sobic.006G075801 10.0kb upstream 10.0kb upstream 10000 false Chr06: 44031315-44041314 Sorghum bicolor
Sobic.006G075801 10.0kb downstream 10.0kb downstream 12642 true Chr06: 44041315-44053956 Sorghum bicolor
Sobic.006G075801 10.0kb downstream 10.0kb downstream 10000 false Chr06: 44043957-44053956 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181101 5267 Panicoideae View MSA
124575951 5269 Grass View MSA
122041845 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.52       High
cufflinks 0.463        
cufflinks 0.889        
cufflinks 0.827        
cufflinks 0.246       Low
cufflinks 1.379        
cufflinks 0.642        
cufflinks 1.62       High
cufflinks 0.393        
cufflinks 0.253       Low
cufflinks 1.27        
cufflinks 1.203        
cufflinks 0.133       Low
cufflinks 1.523        
cufflinks 0.698        
cufflinks 0.596        
cufflinks 0.461        
cufflinks 0.616        
cufflinks 1.745       High
cufflinks 0.435        
cufflinks 0.62        
cufflinks 0.86        
cufflinks 1.168        
cufflinks 1.055        
cufflinks 1.761       High
cufflinks 0.871        
cufflinks 0.938        
cufflinks 0.487        
cufflinks 1.256        
cufflinks 0.853        

0 Strain