Gene : Sobic.002G118300 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR33294:SF5 - AWPM-19-LIKE FAMILY PROTEIN Genomic Order:  1204
Name:  ? Sobic.002G118300 Secondary Identifier:  ? PAC:37952034
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0 Pathways

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G118300 0.5kb upstream 0.5kb upstream 1715 true Chr02: 14746040-14747754 Sorghum bicolor
Sobic.002G118300 0.5kb upstream 0.5kb upstream 500 false Chr02: 14746040-14746539 Sorghum bicolor
Sobic.002G118300 0.5kb downstream 0.5kb downstream 1715 true Chr02: 14746540-14748254 Sorghum bicolor
Sobic.002G118300 0.5kb downstream 0.5kb downstream 500 false Chr02: 14747755-14748254 Sorghum bicolor
Sobic.002G118300 1.0kb upstream 1.0kb upstream 2215 true Chr02: 14745540-14747754 Sorghum bicolor
Sobic.002G118300 1.0kb upstream 1.0kb upstream 1000 false Chr02: 14745540-14746539 Sorghum bicolor
Sobic.002G118300 1.0kb downstream 1.0kb downstream 2215 true Chr02: 14746540-14748754 Sorghum bicolor
Sobic.002G118300 1.0kb downstream 1.0kb downstream 1000 false Chr02: 14747755-14748754 Sorghum bicolor
Sobic.002G118300 2.0kb upstream 2.0kb upstream 3215 true Chr02: 14744540-14747754 Sorghum bicolor
Sobic.002G118300 2.0kb upstream 2.0kb upstream 2000 false Chr02: 14744540-14746539 Sorghum bicolor
Sobic.002G118300 2.0kb downstream 2.0kb downstream 3215 true Chr02: 14746540-14749754 Sorghum bicolor
Sobic.002G118300 2.0kb downstream 2.0kb downstream 2000 false Chr02: 14747755-14749754 Sorghum bicolor
Sobic.002G118300 5.0kb upstream 5.0kb upstream 6215 true Chr02: 14741540-14747754 Sorghum bicolor
Sobic.002G118300 5.0kb upstream 5.0kb upstream 5000 false Chr02: 14741540-14746539 Sorghum bicolor
Sobic.002G118300 5.0kb downstream 5.0kb downstream 6215 true Chr02: 14746540-14752754 Sorghum bicolor
Sobic.002G118300 5.0kb downstream 5.0kb downstream 5000 false Chr02: 14747755-14752754 Sorghum bicolor
Sobic.002G118300 10.0kb upstream 10.0kb upstream 11215 true Chr02: 14736540-14747754 Sorghum bicolor
Sobic.002G118300 10.0kb upstream 10.0kb upstream 10000 false Chr02: 14736540-14746539 Sorghum bicolor
Sobic.002G118300 10.0kb downstream 10.0kb downstream 11215 true Chr02: 14746540-14757754 Sorghum bicolor
Sobic.002G118300 10.0kb downstream 10.0kb downstream 10000 false Chr02: 14747755-14757754 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185510 5267 Panicoideae View MSA
124587677 5269 Grass View MSA
122044376 5273 Angiosperm View MSA
121349282 5274 Embryophyte View MSA
123381254 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.975       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.31        
cufflinks 1116.516     High High
cufflinks 0.013     Low  
cufflinks 0.01     Low  

0 Strain