Gene : Sobic.006G084000 S. bicolor v3.1.1
Defline:  (1 of 1) 2.8.4.5 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase / Methylthio-threonylcarbamoyl-adenosine transferase B Genomic Order:  874
Name:  ? Sobic.006G084000 Secondary Identifier:  ? PAC:37946709
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G084000 0.5kb upstream 0.5kb upstream 4008 true Chr06: 45311789-45315796 Sorghum bicolor
Sobic.006G084000 0.5kb upstream 0.5kb upstream 500 false Chr06: 45315297-45315796 Sorghum bicolor
Sobic.006G084000 0.5kb downstream 0.5kb downstream 4008 true Chr06: 45311289-45315296 Sorghum bicolor
Sobic.006G084000 0.5kb downstream 0.5kb downstream 500 false Chr06: 45311289-45311788 Sorghum bicolor
Sobic.006G084000 1.0kb upstream 1.0kb upstream 4508 true Chr06: 45311789-45316296 Sorghum bicolor
Sobic.006G084000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 45315297-45316296 Sorghum bicolor
Sobic.006G084000 1.0kb downstream 1.0kb downstream 4508 true Chr06: 45310789-45315296 Sorghum bicolor
Sobic.006G084000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 45310789-45311788 Sorghum bicolor
Sobic.006G084000 2.0kb upstream 2.0kb upstream 5508 true Chr06: 45311789-45317296 Sorghum bicolor
Sobic.006G084000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 45315297-45317296 Sorghum bicolor
Sobic.006G084000 2.0kb downstream 2.0kb downstream 5508 true Chr06: 45309789-45315296 Sorghum bicolor
Sobic.006G084000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 45309789-45311788 Sorghum bicolor
Sobic.006G084000 5.0kb upstream 5.0kb upstream 8508 true Chr06: 45311789-45320296 Sorghum bicolor
Sobic.006G084000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 45315297-45320296 Sorghum bicolor
Sobic.006G084000 5.0kb downstream 5.0kb downstream 8508 true Chr06: 45306789-45315296 Sorghum bicolor
Sobic.006G084000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 45306789-45311788 Sorghum bicolor
Sobic.006G084000 10.0kb upstream 10.0kb upstream 13508 true Chr06: 45311789-45325296 Sorghum bicolor
Sobic.006G084000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 45315297-45325296 Sorghum bicolor
Sobic.006G084000 10.0kb downstream 10.0kb downstream 13508 true Chr06: 45301789-45315296 Sorghum bicolor
Sobic.006G084000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 45301789-45311788 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183042 5267 Panicoideae View MSA
124576915 5269 Grass View MSA
122047649 5273 Angiosperm View MSA
121350864 5274 Embryophyte View MSA
123427541 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.132     High High
cufflinks 0.434       Low
cufflinks 1.849       Low
cufflinks 5.334        
cufflinks 9.136        
cufflinks 5.405        
cufflinks 4.207        
cufflinks 0.948       Low
cufflinks 11.372        
cufflinks 9.823        
cufflinks 6.481        
cufflinks 6.668        
cufflinks 5.66        
cufflinks 6.901        
cufflinks 6.414        
cufflinks 1.491       Low
cufflinks 5.094        
cufflinks 4.945        
cufflinks 1.643       Low
cufflinks 5.67        
cufflinks 16.347     High High
cufflinks 8.915        
cufflinks 7.577        
cufflinks 8.326        
cufflinks 1.125       Low
cufflinks 0.353       Low
cufflinks 6.537        
cufflinks 19.504     High High
cufflinks 3.425        
cufflinks 9.095        

0 Strain