Gene : Sobic.002G092050 S. bicolor v3.1.1
Defline:  (1 of 30) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  935
Name:  ? Sobic.002G092050 Secondary Identifier:  ? PAC:37951231
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G092050 0.5kb upstream 0.5kb upstream 2659 true Chr02: 9577525-9580183 Sorghum bicolor
Sobic.002G092050 0.5kb upstream 0.5kb upstream 500 false Chr02: 9579684-9580183 Sorghum bicolor
Sobic.002G092050 0.5kb downstream 0.5kb downstream 2659 true Chr02: 9577025-9579683 Sorghum bicolor
Sobic.002G092050 0.5kb downstream 0.5kb downstream 500 false Chr02: 9577025-9577524 Sorghum bicolor
Sobic.002G092050 1.0kb upstream 1.0kb upstream 3159 true Chr02: 9577525-9580683 Sorghum bicolor
Sobic.002G092050 1.0kb upstream 1.0kb upstream 1000 false Chr02: 9579684-9580683 Sorghum bicolor
Sobic.002G092050 1.0kb downstream 1.0kb downstream 3159 true Chr02: 9576525-9579683 Sorghum bicolor
Sobic.002G092050 1.0kb downstream 1.0kb downstream 1000 false Chr02: 9576525-9577524 Sorghum bicolor
Sobic.002G092050 2.0kb upstream 2.0kb upstream 4159 true Chr02: 9577525-9581683 Sorghum bicolor
Sobic.002G092050 2.0kb upstream 2.0kb upstream 2000 false Chr02: 9579684-9581683 Sorghum bicolor
Sobic.002G092050 2.0kb downstream 2.0kb downstream 4159 true Chr02: 9575525-9579683 Sorghum bicolor
Sobic.002G092050 2.0kb downstream 2.0kb downstream 2000 false Chr02: 9575525-9577524 Sorghum bicolor
Sobic.002G092050 5.0kb upstream 5.0kb upstream 7159 true Chr02: 9577525-9584683 Sorghum bicolor
Sobic.002G092050 5.0kb upstream 5.0kb upstream 5000 false Chr02: 9579684-9584683 Sorghum bicolor
Sobic.002G092050 5.0kb downstream 5.0kb downstream 7159 true Chr02: 9572525-9579683 Sorghum bicolor
Sobic.002G092050 5.0kb downstream 5.0kb downstream 5000 false Chr02: 9572525-9577524 Sorghum bicolor
Sobic.002G092050 10.0kb upstream 10.0kb upstream 12159 true Chr02: 9577525-9589683 Sorghum bicolor
Sobic.002G092050 10.0kb upstream 10.0kb upstream 10000 false Chr02: 9579684-9589683 Sorghum bicolor
Sobic.002G092050 10.0kb downstream 10.0kb downstream 12159 true Chr02: 9567525-9579683 Sorghum bicolor
Sobic.002G092050 10.0kb downstream 10.0kb downstream 10000 false Chr02: 9567525-9577524 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122173253 5267 Panicoideae View MSA
124464016 5269 Grass View MSA
122042185 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.666        
cufflinks 0.244       Low
cufflinks 0.606       Low
cufflinks 1.427        
cufflinks 3.925        
cufflinks 1.356        
cufflinks 2.416        
cufflinks 0.455       Low
cufflinks 3.518        
cufflinks 3.93        
cufflinks 3.03        
cufflinks 4.635        
cufflinks 1.998        
cufflinks 3.855        
cufflinks 2.238        
cufflinks 0.827        
cufflinks 2.668        
cufflinks 2.625        
cufflinks 0.783        
cufflinks 2.526        
cufflinks 9.449       High
cufflinks 3.417        
cufflinks 3.994        
cufflinks 3.865        
cufflinks 0.416       Low
cufflinks 0.271       Low
cufflinks 2.745        
cufflinks 2.546        
cufflinks 1.426        
cufflinks 3.928        

0 Strain