Gene : Sobic.002G087500 S. bicolor v3.1.1
Defline:  (1 of 2) PF00652 - Ricin-type beta-trefoil lectin domain (Ricin_B_lectin) Genomic Order:  893
Name:  ? Sobic.002G087500 Secondary Identifier:  ? PAC:37953676
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G087500 0.5kb upstream 0.5kb upstream 5211 true Chr02: 9248510-9253720 Sorghum bicolor
Sobic.002G087500 0.5kb upstream 0.5kb upstream 500 false Chr02: 9248510-9249009 Sorghum bicolor
Sobic.002G087500 0.5kb downstream 0.5kb downstream 5211 true Chr02: 9249010-9254220 Sorghum bicolor
Sobic.002G087500 0.5kb downstream 0.5kb downstream 500 false Chr02: 9253721-9254220 Sorghum bicolor
Sobic.002G087500 1.0kb upstream 1.0kb upstream 5711 true Chr02: 9248010-9253720 Sorghum bicolor
Sobic.002G087500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 9248010-9249009 Sorghum bicolor
Sobic.002G087500 1.0kb downstream 1.0kb downstream 5711 true Chr02: 9249010-9254720 Sorghum bicolor
Sobic.002G087500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 9253721-9254720 Sorghum bicolor
Sobic.002G087500 2.0kb upstream 2.0kb upstream 6711 true Chr02: 9247010-9253720 Sorghum bicolor
Sobic.002G087500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 9247010-9249009 Sorghum bicolor
Sobic.002G087500 2.0kb downstream 2.0kb downstream 6711 true Chr02: 9249010-9255720 Sorghum bicolor
Sobic.002G087500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 9253721-9255720 Sorghum bicolor
Sobic.002G087500 5.0kb upstream 5.0kb upstream 9711 true Chr02: 9244010-9253720 Sorghum bicolor
Sobic.002G087500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 9244010-9249009 Sorghum bicolor
Sobic.002G087500 5.0kb downstream 5.0kb downstream 9711 true Chr02: 9249010-9258720 Sorghum bicolor
Sobic.002G087500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 9253721-9258720 Sorghum bicolor
Sobic.002G087500 10.0kb upstream 10.0kb upstream 14711 true Chr02: 9239010-9253720 Sorghum bicolor
Sobic.002G087500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 9239010-9249009 Sorghum bicolor
Sobic.002G087500 10.0kb downstream 10.0kb downstream 14711 true Chr02: 9249010-9263720 Sorghum bicolor
Sobic.002G087500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 9253721-9263720 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029645 5273 Angiosperm View MSA
122192976 5267 Panicoideae View MSA
124466430 5269 Grass View MSA
121298950 5274 Embryophyte View MSA
123336886 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.127        
cufflinks 0.031     Low Low
cufflinks 11.386     High  
cufflinks 0.009     Low Low
cufflinks 44.75     High High
cufflinks 1.253        
cufflinks 14.171     High  
cufflinks 0.436        
cufflinks 0.256        
cufflinks 0.175        
cufflinks 0.042     Low Low
cufflinks 0.009     Low Low
cufflinks 2.107        
cufflinks 0.018     Low Low
cufflinks 9.14        
cufflinks 70.631     High High
cufflinks 9.067        
cufflinks 11.786     High  
cufflinks 60.54     High High
cufflinks 5.406        
cufflinks 46.562     High High
cufflinks 0.109     Low  
cufflinks 0.072     Low  
cufflinks 0.027     Low Low
cufflinks 0.031     Low Low
cufflinks 0.028     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.058     Low  
cufflinks 2.87        
cufflinks 8.812        

0 Strain