Gene : Sobic.002G194800 S. bicolor v3.1.1
Defline:  (1 of 61) PF13839//PF14416 - GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p (PC-Esterase) // PMR5 N terminal Domain (PMR5N) Genomic Order:  1990
Name:  ? Sobic.002G194800 Secondary Identifier:  ? PAC:37952893
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G194800 0.5kb upstream 0.5kb upstream 4370 true Chr02: 58292379-58296748 Sorghum bicolor
Sobic.002G194800 0.5kb upstream 0.5kb upstream 500 false Chr02: 58296249-58296748 Sorghum bicolor
Sobic.002G194800 0.5kb downstream 0.5kb downstream 4370 true Chr02: 58291879-58296248 Sorghum bicolor
Sobic.002G194800 0.5kb downstream 0.5kb downstream 500 false Chr02: 58291879-58292378 Sorghum bicolor
Sobic.002G194800 1.0kb upstream 1.0kb upstream 4870 true Chr02: 58292379-58297248 Sorghum bicolor
Sobic.002G194800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 58296249-58297248 Sorghum bicolor
Sobic.002G194800 1.0kb downstream 1.0kb downstream 4870 true Chr02: 58291379-58296248 Sorghum bicolor
Sobic.002G194800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 58291379-58292378 Sorghum bicolor
Sobic.002G194800 2.0kb upstream 2.0kb upstream 5870 true Chr02: 58292379-58298248 Sorghum bicolor
Sobic.002G194800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 58296249-58298248 Sorghum bicolor
Sobic.002G194800 2.0kb downstream 2.0kb downstream 5870 true Chr02: 58290379-58296248 Sorghum bicolor
Sobic.002G194800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 58290379-58292378 Sorghum bicolor
Sobic.002G194800 5.0kb upstream 5.0kb upstream 8870 true Chr02: 58292379-58301248 Sorghum bicolor
Sobic.002G194800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 58296249-58301248 Sorghum bicolor
Sobic.002G194800 5.0kb downstream 5.0kb downstream 8870 true Chr02: 58287379-58296248 Sorghum bicolor
Sobic.002G194800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 58287379-58292378 Sorghum bicolor
Sobic.002G194800 10.0kb upstream 10.0kb upstream 13870 true Chr02: 58292379-58306248 Sorghum bicolor
Sobic.002G194800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 58296249-58306248 Sorghum bicolor
Sobic.002G194800 10.0kb downstream 10.0kb downstream 13870 true Chr02: 58282379-58296248 Sorghum bicolor
Sobic.002G194800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 58282379-58292378 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194621 5267 Panicoideae View MSA
124575464 5269 Grass View MSA
122045954 5273 Angiosperm View MSA
123428901 5275 Viridiplantae View MSA
121351071 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.095        
cufflinks 0.851       Low
cufflinks 1.219       Low
cufflinks 1.844        
cufflinks 3.821        
cufflinks 1.562        
cufflinks 2.349        
cufflinks 1.171       Low
cufflinks 1.257       Low
cufflinks 2.172        
cufflinks 3.688        
cufflinks 4.341       High
cufflinks 3.22        
cufflinks 4.026       High
cufflinks 3.615        
cufflinks 0.977       Low
cufflinks 2.366        
cufflinks 2.465        
cufflinks 0.89       Low
cufflinks 2.193        
cufflinks 2.744        
cufflinks 3.416        
cufflinks 4.176       High
cufflinks 4.04       High
cufflinks 0.729       Low
cufflinks 0.86       Low
cufflinks 2.72        
cufflinks 1.073       Low
cufflinks 3.336        
cufflinks 3.196        

0 Strain