Gene : Sobic.002G254800 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11390:SF20 - DNA TOPOISOMERASE 3-BETA-1 Genomic Order:  2601
Name:  ? Sobic.002G254800 Secondary Identifier:  ? PAC:37955197
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G254800 0.5kb upstream 0.5kb upstream 15400 true Chr02: 64119723-64135122 Sorghum bicolor
Sobic.002G254800 0.5kb upstream 0.5kb upstream 500 false Chr02: 64119723-64120222 Sorghum bicolor
Sobic.002G254800 0.5kb downstream 0.5kb downstream 15400 true Chr02: 64120223-64135622 Sorghum bicolor
Sobic.002G254800 0.5kb downstream 0.5kb downstream 500 false Chr02: 64135123-64135622 Sorghum bicolor
Sobic.002G254800 1.0kb upstream 1.0kb upstream 15900 true Chr02: 64119223-64135122 Sorghum bicolor
Sobic.002G254800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 64119223-64120222 Sorghum bicolor
Sobic.002G254800 1.0kb downstream 1.0kb downstream 15900 true Chr02: 64120223-64136122 Sorghum bicolor
Sobic.002G254800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 64135123-64136122 Sorghum bicolor
Sobic.002G254800 2.0kb upstream 2.0kb upstream 16900 true Chr02: 64118223-64135122 Sorghum bicolor
Sobic.002G254800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 64118223-64120222 Sorghum bicolor
Sobic.002G254800 2.0kb downstream 2.0kb downstream 16900 true Chr02: 64120223-64137122 Sorghum bicolor
Sobic.002G254800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 64135123-64137122 Sorghum bicolor
Sobic.002G254800 5.0kb upstream 5.0kb upstream 19900 true Chr02: 64115223-64135122 Sorghum bicolor
Sobic.002G254800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 64115223-64120222 Sorghum bicolor
Sobic.002G254800 5.0kb downstream 5.0kb downstream 19900 true Chr02: 64120223-64140122 Sorghum bicolor
Sobic.002G254800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 64135123-64140122 Sorghum bicolor
Sobic.002G254800 10.0kb upstream 10.0kb upstream 24900 true Chr02: 64110223-64135122 Sorghum bicolor
Sobic.002G254800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 64110223-64120222 Sorghum bicolor
Sobic.002G254800 10.0kb downstream 10.0kb downstream 24900 true Chr02: 64120223-64145122 Sorghum bicolor
Sobic.002G254800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 64135123-64145122 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041072 5273 Angiosperm View MSA
122189230 5267 Panicoideae View MSA
124579087 5269 Grass View MSA
121346575 5274 Embryophyte View MSA
123425013 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.688        
cufflinks 0.043       Low
cufflinks 0.186        
cufflinks 0.413        
cufflinks 1.116       High
cufflinks 0.468        
cufflinks 0.327        
cufflinks 0.082       Low
cufflinks 0.947       High
cufflinks 1.145       High
cufflinks 0.475        
cufflinks 0.679        
cufflinks 0.428        
cufflinks 0.368        
cufflinks 0.592        
cufflinks 0.089       Low
cufflinks 0.267        
cufflinks 0.28        
cufflinks 0.112       Low
cufflinks 0.349        
cufflinks 2.181       High
cufflinks 0.439        
cufflinks 0.386        
cufflinks 0.445        
cufflinks 0.08       Low
cufflinks 0.045       Low
cufflinks 0.913       High
cufflinks 0.17        
cufflinks 0.167        
cufflinks 0.925       High

0 Strain