Gene : Sobic.006G142400 S. bicolor v3.1.1
Defline:  (1 of 1) K03142 - transcription initiation factor TFIIH subunit 2 (TFIIH2, GTF2H2, SSL1) Genomic Order:  1493
Name:  ? Sobic.006G142400 Secondary Identifier:  ? PAC:37948719
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G142400 0.5kb upstream 0.5kb upstream 5126 true Chr06: 50443533-50448658 Sorghum bicolor
Sobic.006G142400 0.5kb upstream 0.5kb upstream 500 false Chr06: 50448159-50448658 Sorghum bicolor
Sobic.006G142400 0.5kb downstream 0.5kb downstream 5126 true Chr06: 50443033-50448158 Sorghum bicolor
Sobic.006G142400 0.5kb downstream 0.5kb downstream 500 false Chr06: 50443033-50443532 Sorghum bicolor
Sobic.006G142400 1.0kb upstream 1.0kb upstream 5626 true Chr06: 50443533-50449158 Sorghum bicolor
Sobic.006G142400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 50448159-50449158 Sorghum bicolor
Sobic.006G142400 1.0kb downstream 1.0kb downstream 5626 true Chr06: 50442533-50448158 Sorghum bicolor
Sobic.006G142400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 50442533-50443532 Sorghum bicolor
Sobic.006G142400 2.0kb upstream 2.0kb upstream 6626 true Chr06: 50443533-50450158 Sorghum bicolor
Sobic.006G142400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 50448159-50450158 Sorghum bicolor
Sobic.006G142400 2.0kb downstream 2.0kb downstream 6626 true Chr06: 50441533-50448158 Sorghum bicolor
Sobic.006G142400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 50441533-50443532 Sorghum bicolor
Sobic.006G142400 5.0kb upstream 5.0kb upstream 9626 true Chr06: 50443533-50453158 Sorghum bicolor
Sobic.006G142400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 50448159-50453158 Sorghum bicolor
Sobic.006G142400 5.0kb downstream 5.0kb downstream 9626 true Chr06: 50438533-50448158 Sorghum bicolor
Sobic.006G142400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 50438533-50443532 Sorghum bicolor
Sobic.006G142400 10.0kb upstream 10.0kb upstream 14626 true Chr06: 50443533-50458158 Sorghum bicolor
Sobic.006G142400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 50448159-50458158 Sorghum bicolor
Sobic.006G142400 10.0kb downstream 10.0kb downstream 14626 true Chr06: 50433533-50448158 Sorghum bicolor
Sobic.006G142400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 50433533-50443532 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183508 5267 Panicoideae View MSA
124570380 5269 Grass View MSA
122046479 5273 Angiosperm View MSA
121344622 5274 Embryophyte View MSA
123424882 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.962     High High
cufflinks 1.313       Low
cufflinks 4.738        
cufflinks 5.514        
cufflinks 9.142        
cufflinks 6.883        
cufflinks 5.703        
cufflinks 2.458       Low
cufflinks 8.248        
cufflinks 7.59        
cufflinks 7.093        
cufflinks 8.133        
cufflinks 7.485        
cufflinks 9.422        
cufflinks 9.244        
cufflinks 3.152       Low
cufflinks 6.282        
cufflinks 6.13        
cufflinks 4.285        
cufflinks 6.681        
cufflinks 11.271        
cufflinks 9.453        
cufflinks 8.873        
cufflinks 9.548        
cufflinks 1.614       Low
cufflinks 1.188       Low
cufflinks 7.587        
cufflinks 14.595     High High
cufflinks 4.025        
cufflinks 10.12        

0 Strain