Gene : Sobic.006G173900 S. bicolor v3.1.1
Defline:  (1 of 1) 1.11.1.12//1.11.1.9 - Phospholipid-hydroperoxide glutathione peroxidase / Peroxidation-inhibiting protein // Glutathione peroxidase Genomic Order:  1819
Name:  ? Sobic.006G173900 Secondary Identifier:  ? PAC:37946004
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor DETOX1-PWY-1 Sorghum bicolor pathologic  
Sbicolor PWY-4081 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G173900 0.5kb upstream 0.5kb upstream 2472 true Chr06: 52991201-52993672 Sorghum bicolor
Sobic.006G173900 0.5kb upstream 0.5kb upstream 500 false Chr06: 52991201-52991700 Sorghum bicolor
Sobic.006G173900 0.5kb downstream 0.5kb downstream 2472 true Chr06: 52991701-52994172 Sorghum bicolor
Sobic.006G173900 0.5kb downstream 0.5kb downstream 500 false Chr06: 52993673-52994172 Sorghum bicolor
Sobic.006G173900 1.0kb upstream 1.0kb upstream 2972 true Chr06: 52990701-52993672 Sorghum bicolor
Sobic.006G173900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 52990701-52991700 Sorghum bicolor
Sobic.006G173900 1.0kb downstream 1.0kb downstream 2972 true Chr06: 52991701-52994672 Sorghum bicolor
Sobic.006G173900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 52993673-52994672 Sorghum bicolor
Sobic.006G173900 2.0kb upstream 2.0kb upstream 3972 true Chr06: 52989701-52993672 Sorghum bicolor
Sobic.006G173900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 52989701-52991700 Sorghum bicolor
Sobic.006G173900 2.0kb downstream 2.0kb downstream 3972 true Chr06: 52991701-52995672 Sorghum bicolor
Sobic.006G173900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 52993673-52995672 Sorghum bicolor
Sobic.006G173900 5.0kb upstream 5.0kb upstream 6972 true Chr06: 52986701-52993672 Sorghum bicolor
Sobic.006G173900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 52986701-52991700 Sorghum bicolor
Sobic.006G173900 5.0kb downstream 5.0kb downstream 6972 true Chr06: 52991701-52998672 Sorghum bicolor
Sobic.006G173900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 52993673-52998672 Sorghum bicolor
Sobic.006G173900 10.0kb upstream 10.0kb upstream 11972 true Chr06: 52981701-52993672 Sorghum bicolor
Sobic.006G173900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 52981701-52991700 Sorghum bicolor
Sobic.006G173900 10.0kb downstream 10.0kb downstream 11972 true Chr06: 52991701-53003672 Sorghum bicolor
Sobic.006G173900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 52993673-53003672 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195161 5267 Panicoideae View MSA
124583116 5269 Grass View MSA
122049273 5273 Angiosperm View MSA
121349724 5274 Embryophyte View MSA
123426849 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 118.906     High  
cufflinks 42.067     High Low
cufflinks 139.187     High High
cufflinks 122.229     High High
cufflinks 91.278     High  
cufflinks 149.149     High High
cufflinks 53.686     High  
cufflinks 67.812     High  
cufflinks 74.302     High  
cufflinks 85.622     High  
cufflinks 110.982     High  
cufflinks 53.861     High  
cufflinks 85.138     High  
cufflinks 64.41     High  
cufflinks 67.751     High  
cufflinks 64.896     High  
cufflinks 53.679     High  
cufflinks 55.263     High  
cufflinks 79.186     High  
cufflinks 56.607     High  
cufflinks 32.443     High Low
cufflinks 40.703     High Low
cufflinks 60.244     High  
cufflinks 52.698     High  
cufflinks 42.452     High Low
cufflinks 43.91     High Low
cufflinks 192.05     High High
cufflinks 91.912     High  
cufflinks 54.531     High  
cufflinks 77.444     High  

0 Strain