Gene : Sobic.002G238000 S. bicolor v3.1.1
Defline:  (1 of 1) 6.5.1.4 - RNA 3'-terminal-phosphate cyclase (ATP) / RNA-3'-phosphate cyclase Genomic Order:  2434
Name:  ? Sobic.002G238000 Secondary Identifier:  ? PAC:37954336
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G238000 0.5kb upstream 0.5kb upstream 4274 true Chr02: 62850961-62855234 Sorghum bicolor
Sobic.002G238000 0.5kb upstream 0.5kb upstream 500 false Chr02: 62850961-62851460 Sorghum bicolor
Sobic.002G238000 0.5kb downstream 0.5kb downstream 4274 true Chr02: 62851461-62855734 Sorghum bicolor
Sobic.002G238000 0.5kb downstream 0.5kb downstream 500 false Chr02: 62855235-62855734 Sorghum bicolor
Sobic.002G238000 1.0kb upstream 1.0kb upstream 4774 true Chr02: 62850461-62855234 Sorghum bicolor
Sobic.002G238000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 62850461-62851460 Sorghum bicolor
Sobic.002G238000 1.0kb downstream 1.0kb downstream 4774 true Chr02: 62851461-62856234 Sorghum bicolor
Sobic.002G238000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 62855235-62856234 Sorghum bicolor
Sobic.002G238000 2.0kb upstream 2.0kb upstream 5774 true Chr02: 62849461-62855234 Sorghum bicolor
Sobic.002G238000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 62849461-62851460 Sorghum bicolor
Sobic.002G238000 2.0kb downstream 2.0kb downstream 5774 true Chr02: 62851461-62857234 Sorghum bicolor
Sobic.002G238000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 62855235-62857234 Sorghum bicolor
Sobic.002G238000 5.0kb upstream 5.0kb upstream 8774 true Chr02: 62846461-62855234 Sorghum bicolor
Sobic.002G238000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 62846461-62851460 Sorghum bicolor
Sobic.002G238000 5.0kb downstream 5.0kb downstream 8774 true Chr02: 62851461-62860234 Sorghum bicolor
Sobic.002G238000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 62855235-62860234 Sorghum bicolor
Sobic.002G238000 10.0kb upstream 10.0kb upstream 13774 true Chr02: 62841461-62855234 Sorghum bicolor
Sobic.002G238000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 62841461-62851460 Sorghum bicolor
Sobic.002G238000 10.0kb downstream 10.0kb downstream 13774 true Chr02: 62851461-62865234 Sorghum bicolor
Sobic.002G238000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 62855235-62865234 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026420 5273 Angiosperm View MSA
122179515 5267 Panicoideae View MSA
124575029 5269 Grass View MSA
121344300 5274 Embryophyte View MSA
123427148 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.42     High High
cufflinks 0.481       Low
cufflinks 1.913        
cufflinks 5.17        
cufflinks 6.741        
cufflinks 5.833        
cufflinks 3.108        
cufflinks 0.659       Low
cufflinks 8.346        
cufflinks 8.256        
cufflinks 5.622        
cufflinks 6.4        
cufflinks 4.783        
cufflinks 6.464        
cufflinks 5.11        
cufflinks 1.842        
cufflinks 3.575        
cufflinks 3.678        
cufflinks 1.539       Low
cufflinks 3.925        
cufflinks 12.058       High
cufflinks 7.083        
cufflinks 6.756        
cufflinks 6.881        
cufflinks 0.994       Low
cufflinks 0.417       Low
cufflinks 7.157        
cufflinks 32.042     High High
cufflinks 3.03        
cufflinks 8.275        

0 Strain