Gene : Sobic.006G101800 S. bicolor v3.1.1
Defline:  (1 of 3) PTHR23160//PTHR23160:SF3 - MYOSIN HEAVY CHAIN-RELATED // SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED Genomic Order:  1055
Name:  ? Sobic.006G101800 Secondary Identifier:  ? PAC:37949340
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G101800 0.5kb upstream 0.5kb upstream 9510 true Chr06: 47216682-47226191 Sorghum bicolor
Sobic.006G101800 0.5kb upstream 0.5kb upstream 500 false Chr06: 47216682-47217181 Sorghum bicolor
Sobic.006G101800 0.5kb downstream 0.5kb downstream 9510 true Chr06: 47217182-47226691 Sorghum bicolor
Sobic.006G101800 0.5kb downstream 0.5kb downstream 500 false Chr06: 47226192-47226691 Sorghum bicolor
Sobic.006G101800 1.0kb upstream 1.0kb upstream 10010 true Chr06: 47216182-47226191 Sorghum bicolor
Sobic.006G101800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 47216182-47217181 Sorghum bicolor
Sobic.006G101800 1.0kb downstream 1.0kb downstream 10010 true Chr06: 47217182-47227191 Sorghum bicolor
Sobic.006G101800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 47226192-47227191 Sorghum bicolor
Sobic.006G101800 2.0kb upstream 2.0kb upstream 11010 true Chr06: 47215182-47226191 Sorghum bicolor
Sobic.006G101800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 47215182-47217181 Sorghum bicolor
Sobic.006G101800 2.0kb downstream 2.0kb downstream 11010 true Chr06: 47217182-47228191 Sorghum bicolor
Sobic.006G101800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 47226192-47228191 Sorghum bicolor
Sobic.006G101800 5.0kb upstream 5.0kb upstream 14010 true Chr06: 47212182-47226191 Sorghum bicolor
Sobic.006G101800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 47212182-47217181 Sorghum bicolor
Sobic.006G101800 5.0kb downstream 5.0kb downstream 14010 true Chr06: 47217182-47231191 Sorghum bicolor
Sobic.006G101800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 47226192-47231191 Sorghum bicolor
Sobic.006G101800 10.0kb upstream 10.0kb upstream 19010 true Chr06: 47207182-47226191 Sorghum bicolor
Sobic.006G101800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 47207182-47217181 Sorghum bicolor
Sobic.006G101800 10.0kb downstream 10.0kb downstream 19010 true Chr06: 47217182-47236191 Sorghum bicolor
Sobic.006G101800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 47226192-47236191 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181562 5267 Panicoideae View MSA
124580617 5269 Grass View MSA
122042808 5273 Angiosperm View MSA
121349481 5274 Embryophyte View MSA
123381327 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.445        
cufflinks 1.098        
cufflinks 1.972       High
cufflinks 1.46        
cufflinks 1.342        
cufflinks 1.765       High
cufflinks 1.412        
cufflinks 0.814       Low
cufflinks 1.492        
cufflinks 1.77       High
cufflinks 0.944       Low
cufflinks 1.503        
cufflinks 1.667        
cufflinks 1.052        
cufflinks 2.319       High
cufflinks 1.304        
cufflinks 1.306        
cufflinks 1.405        
cufflinks 1.52        
cufflinks 1.58        
cufflinks 2.044       High
cufflinks 1.022        
cufflinks 1.07        
cufflinks 0.961        
cufflinks 1.421        
cufflinks 1.19        
cufflinks 0.972        
cufflinks 0.802       Low
cufflinks 0.853       Low
cufflinks 2.197       High

0 Strain