Gene : Sobic.006G231700 S. bicolor v3.1.1
Defline:  (1 of 1) K12626 - U6 snRNA-associated Sm-like protein LSm7 (LSM7) Genomic Order:  2418
Name:  ? Sobic.006G231700 Secondary Identifier:  ? PAC:37947444
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G231700 0.5kb upstream 0.5kb upstream 2888 true Chr06: 57457672-57460559 Sorghum bicolor
Sobic.006G231700 0.5kb upstream 0.5kb upstream 500 false Chr06: 57460060-57460559 Sorghum bicolor
Sobic.006G231700 0.5kb downstream 0.5kb downstream 2888 true Chr06: 57457172-57460059 Sorghum bicolor
Sobic.006G231700 0.5kb downstream 0.5kb downstream 500 false Chr06: 57457172-57457671 Sorghum bicolor
Sobic.006G231700 1.0kb upstream 1.0kb upstream 3388 true Chr06: 57457672-57461059 Sorghum bicolor
Sobic.006G231700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 57460060-57461059 Sorghum bicolor
Sobic.006G231700 1.0kb downstream 1.0kb downstream 3388 true Chr06: 57456672-57460059 Sorghum bicolor
Sobic.006G231700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 57456672-57457671 Sorghum bicolor
Sobic.006G231700 2.0kb upstream 2.0kb upstream 4388 true Chr06: 57457672-57462059 Sorghum bicolor
Sobic.006G231700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 57460060-57462059 Sorghum bicolor
Sobic.006G231700 2.0kb downstream 2.0kb downstream 4388 true Chr06: 57455672-57460059 Sorghum bicolor
Sobic.006G231700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 57455672-57457671 Sorghum bicolor
Sobic.006G231700 5.0kb upstream 5.0kb upstream 7388 true Chr06: 57457672-57465059 Sorghum bicolor
Sobic.006G231700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 57460060-57465059 Sorghum bicolor
Sobic.006G231700 5.0kb downstream 5.0kb downstream 7388 true Chr06: 57452672-57460059 Sorghum bicolor
Sobic.006G231700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 57452672-57457671 Sorghum bicolor
Sobic.006G231700 10.0kb upstream 10.0kb upstream 12388 true Chr06: 57457672-57470059 Sorghum bicolor
Sobic.006G231700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 57460060-57470059 Sorghum bicolor
Sobic.006G231700 10.0kb downstream 10.0kb downstream 12388 true Chr06: 57447672-57460059 Sorghum bicolor
Sobic.006G231700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 57447672-57457671 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189734 5267 Panicoideae View MSA
124569098 5269 Grass View MSA
122051368 5273 Angiosperm View MSA
121349484 5274 Embryophyte View MSA
123423999 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.35     High High
cufflinks 4.009       Low
cufflinks 10.547     High  
cufflinks 26.85     High  
cufflinks 17.02     High  
cufflinks 18.492     High  
cufflinks 16.489     High  
cufflinks 6.204       Low
cufflinks 18.224     High  
cufflinks 23.198     High  
cufflinks 13.984     High  
cufflinks 16.709     High  
cufflinks 17.251     High  
cufflinks 18.413     High  
cufflinks 21.451     High  
cufflinks 12.638     High  
cufflinks 21.76     High  
cufflinks 19.365     High  
cufflinks 5.685       Low
cufflinks 25.654     High  
cufflinks 37.686     High High
cufflinks 18.977     High  
cufflinks 18.538     High  
cufflinks 18.671     High  
cufflinks 6.478       Low
cufflinks 3.193       Low
cufflinks 13.935     High  
cufflinks 40.665     High High
cufflinks 11.603     High  
cufflinks 28.53     High High

0 Strain