Gene : Sobic.006G188200 S. bicolor v3.1.1
Defline:  (1 of 1) 1.14.13.129 - Beta-carotene 3-hydroxylase / Beta-carotene 3,3'-monooxygenase Genomic Order:  1961
Name:  ? Sobic.006G188200 Secondary Identifier:  ? PAC:37945741
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor CAROTENOID-PWY Sorghum bicolor pathologic  
Sbicolor PWY-5944 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G188200 0.5kb upstream 0.5kb upstream 3813 true Chr06: 54256666-54260478 Sorghum bicolor
Sobic.006G188200 0.5kb upstream 0.5kb upstream 500 false Chr06: 54256666-54257165 Sorghum bicolor
Sobic.006G188200 0.5kb downstream 0.5kb downstream 3813 true Chr06: 54257166-54260978 Sorghum bicolor
Sobic.006G188200 0.5kb downstream 0.5kb downstream 500 false Chr06: 54260479-54260978 Sorghum bicolor
Sobic.006G188200 1.0kb upstream 1.0kb upstream 4313 true Chr06: 54256166-54260478 Sorghum bicolor
Sobic.006G188200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 54256166-54257165 Sorghum bicolor
Sobic.006G188200 1.0kb downstream 1.0kb downstream 4313 true Chr06: 54257166-54261478 Sorghum bicolor
Sobic.006G188200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 54260479-54261478 Sorghum bicolor
Sobic.006G188200 2.0kb upstream 2.0kb upstream 5313 true Chr06: 54255166-54260478 Sorghum bicolor
Sobic.006G188200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 54255166-54257165 Sorghum bicolor
Sobic.006G188200 2.0kb downstream 2.0kb downstream 5313 true Chr06: 54257166-54262478 Sorghum bicolor
Sobic.006G188200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 54260479-54262478 Sorghum bicolor
Sobic.006G188200 5.0kb upstream 5.0kb upstream 8313 true Chr06: 54252166-54260478 Sorghum bicolor
Sobic.006G188200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 54252166-54257165 Sorghum bicolor
Sobic.006G188200 5.0kb downstream 5.0kb downstream 8313 true Chr06: 54257166-54265478 Sorghum bicolor
Sobic.006G188200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 54260479-54265478 Sorghum bicolor
Sobic.006G188200 10.0kb upstream 10.0kb upstream 13313 true Chr06: 54247166-54260478 Sorghum bicolor
Sobic.006G188200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 54247166-54257165 Sorghum bicolor
Sobic.006G188200 10.0kb downstream 10.0kb downstream 13313 true Chr06: 54257166-54270478 Sorghum bicolor
Sobic.006G188200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 54260479-54270478 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122174702 5267 Panicoideae View MSA
124465122 5269 Grass View MSA
122046641 5273 Angiosperm View MSA
123429104 5275 Viridiplantae View MSA
121351007 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.562        
cufflinks 22.525     High High
cufflinks 3.174        
cufflinks 1.789        
cufflinks 0.596       Low
cufflinks 2.867        
cufflinks 21.194     High High
cufflinks 20.649     High High
cufflinks 0.872        
cufflinks 1.209        
cufflinks 3.517        
cufflinks 1.406        
cufflinks 0.944        
cufflinks 1.164        
cufflinks 3.605        
cufflinks 3.295        
cufflinks 15.285     High High
cufflinks 18.065     High High
cufflinks 2.975        
cufflinks 5.181        
cufflinks 0.127       Low
cufflinks 1.182        
cufflinks 0.628       Low
cufflinks 0.795        
cufflinks 4.087        
cufflinks 19.235     High High
cufflinks 3.477        
cufflinks 1.066        
cufflinks 12.083     High High
cufflinks 1.991        

0 Strain