Gene : Sobic.006G187000 S. bicolor v3.1.1
Defline:  (1 of 19) PF00560//PF07714//PF08263//PF13855 - Leucine Rich Repeat (LRR_1) // Protein tyrosine kinase (Pkinase_Tyr) // Leucine rich repeat N-terminal domain (LRRNT_2) // Leucine rich repeat (LRR_8) Genomic Order:  1948
Name:  ? Sobic.006G187000 Secondary Identifier:  ? PAC:37946985
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G187000 0.5kb upstream 0.5kb upstream 3995 true Chr06: 54187065-54191059 Sorghum bicolor
Sobic.006G187000 0.5kb upstream 0.5kb upstream 500 false Chr06: 54187065-54187564 Sorghum bicolor
Sobic.006G187000 0.5kb downstream 0.5kb downstream 3995 true Chr06: 54187565-54191559 Sorghum bicolor
Sobic.006G187000 0.5kb downstream 0.5kb downstream 500 false Chr06: 54191060-54191559 Sorghum bicolor
Sobic.006G187000 1.0kb upstream 1.0kb upstream 4495 true Chr06: 54186565-54191059 Sorghum bicolor
Sobic.006G187000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 54186565-54187564 Sorghum bicolor
Sobic.006G187000 1.0kb downstream 1.0kb downstream 4495 true Chr06: 54187565-54192059 Sorghum bicolor
Sobic.006G187000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 54191060-54192059 Sorghum bicolor
Sobic.006G187000 2.0kb upstream 2.0kb upstream 5495 true Chr06: 54185565-54191059 Sorghum bicolor
Sobic.006G187000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 54185565-54187564 Sorghum bicolor
Sobic.006G187000 2.0kb downstream 2.0kb downstream 5495 true Chr06: 54187565-54193059 Sorghum bicolor
Sobic.006G187000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 54191060-54193059 Sorghum bicolor
Sobic.006G187000 5.0kb upstream 5.0kb upstream 8495 true Chr06: 54182565-54191059 Sorghum bicolor
Sobic.006G187000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 54182565-54187564 Sorghum bicolor
Sobic.006G187000 5.0kb downstream 5.0kb downstream 8495 true Chr06: 54187565-54196059 Sorghum bicolor
Sobic.006G187000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 54191060-54196059 Sorghum bicolor
Sobic.006G187000 10.0kb upstream 10.0kb upstream 13495 true Chr06: 54177565-54191059 Sorghum bicolor
Sobic.006G187000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 54177565-54187564 Sorghum bicolor
Sobic.006G187000 10.0kb downstream 10.0kb downstream 13495 true Chr06: 54187565-54201059 Sorghum bicolor
Sobic.006G187000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 54191060-54201059 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179450 5267 Panicoideae View MSA
124585992 5269 Grass View MSA
122043000 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121350177 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.077        
cufflinks 0.014     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low Low
cufflinks 39.65     High High
cufflinks 0.017     Low Low
cufflinks 14.509     High  
cufflinks 0.586        
cufflinks 0.317        
cufflinks 1.317        
cufflinks 7.269        
cufflinks 8.178        
cufflinks 0.755        
cufflinks 9.316        
cufflinks 1.952        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 11.153        
cufflinks 10.944        
cufflinks 0.022     Low Low
cufflinks 8.201        
cufflinks 67.464     High High
cufflinks 9.072        
cufflinks 9.111        
cufflinks 11.268     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low Low
cufflinks 1.807        
cufflinks 0.045     Low Low
cufflinks 0.538        
cufflinks 2.344        

0 Strain