Gene : Sobic.006G179400 S. bicolor v3.1.1
Defline:  (1 of 1) K12385 - Niemann-Pick C1 protein (NPC1) Genomic Order:  1872
Name:  ? Sobic.006G179400 Secondary Identifier:  ? PAC:37949134
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G179400 0.5kb upstream 0.5kb upstream 19073 true Chr06: 53366821-53385893 Sorghum bicolor
Sobic.006G179400 0.5kb upstream 0.5kb upstream 500 false Chr06: 53385394-53385893 Sorghum bicolor
Sobic.006G179400 0.5kb downstream 0.5kb downstream 19073 true Chr06: 53366321-53385393 Sorghum bicolor
Sobic.006G179400 0.5kb downstream 0.5kb downstream 500 false Chr06: 53366321-53366820 Sorghum bicolor
Sobic.006G179400 1.0kb upstream 1.0kb upstream 19573 true Chr06: 53366821-53386393 Sorghum bicolor
Sobic.006G179400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 53385394-53386393 Sorghum bicolor
Sobic.006G179400 1.0kb downstream 1.0kb downstream 19573 true Chr06: 53365821-53385393 Sorghum bicolor
Sobic.006G179400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 53365821-53366820 Sorghum bicolor
Sobic.006G179400 2.0kb upstream 2.0kb upstream 20573 true Chr06: 53366821-53387393 Sorghum bicolor
Sobic.006G179400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 53385394-53387393 Sorghum bicolor
Sobic.006G179400 2.0kb downstream 2.0kb downstream 20573 true Chr06: 53364821-53385393 Sorghum bicolor
Sobic.006G179400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 53364821-53366820 Sorghum bicolor
Sobic.006G179400 5.0kb upstream 5.0kb upstream 23573 true Chr06: 53366821-53390393 Sorghum bicolor
Sobic.006G179400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 53385394-53390393 Sorghum bicolor
Sobic.006G179400 5.0kb downstream 5.0kb downstream 23573 true Chr06: 53361821-53385393 Sorghum bicolor
Sobic.006G179400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 53361821-53366820 Sorghum bicolor
Sobic.006G179400 10.0kb upstream 10.0kb upstream 28573 true Chr06: 53366821-53395393 Sorghum bicolor
Sobic.006G179400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 53385394-53395393 Sorghum bicolor
Sobic.006G179400 10.0kb downstream 10.0kb downstream 28573 true Chr06: 53356821-53385393 Sorghum bicolor
Sobic.006G179400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 53356821-53366820 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181536 5267 Panicoideae View MSA
124577659 5269 Grass View MSA
122045765 5273 Angiosperm View MSA
123429105 5275 Viridiplantae View MSA
121349896 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.412       Low
cufflinks 0.73       Low
cufflinks 3.281        
cufflinks 3.743        
cufflinks 6.711        
cufflinks 3.072        
cufflinks 4.32        
cufflinks 3.614        
cufflinks 6.757        
cufflinks 7.044        
cufflinks 7.908       High
cufflinks 8.707       High
cufflinks 8.818       High
cufflinks 6.898        
cufflinks 5.925        
cufflinks 1.833       Low
cufflinks 3.717        
cufflinks 4.379        
cufflinks 1.803       Low
cufflinks 4.229        
cufflinks 3.355        
cufflinks 3.985        
cufflinks 5.862        
cufflinks 5.732        
cufflinks 1.15       Low
cufflinks 0.971       Low
cufflinks 6.452        
cufflinks 1.066       Low
cufflinks 7.273        
cufflinks 8.405       High

0 Strain