Gene : Sobic.006G252900 S. bicolor v3.1.1
Defline:  (1 of 1) KOG0001//KOG0005//KOG0011 - Ubiquitin and ubiquitin-like proteins // Ubiquitin-like protein // Nucleotide excision repair factor NEF2, RAD23 component Genomic Order:  2643
Name:  ? Sobic.006G252900 Secondary Identifier:  ? PAC:37948227
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G252900 0.5kb upstream 0.5kb upstream 10664 true Chr06: 59069060-59079723 Sorghum bicolor
Sobic.006G252900 0.5kb upstream 0.5kb upstream 500 false Chr06: 59079224-59079723 Sorghum bicolor
Sobic.006G252900 0.5kb downstream 0.5kb downstream 10664 true Chr06: 59068560-59079223 Sorghum bicolor
Sobic.006G252900 0.5kb downstream 0.5kb downstream 500 false Chr06: 59068560-59069059 Sorghum bicolor
Sobic.006G252900 1.0kb upstream 1.0kb upstream 11164 true Chr06: 59069060-59080223 Sorghum bicolor
Sobic.006G252900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 59079224-59080223 Sorghum bicolor
Sobic.006G252900 1.0kb downstream 1.0kb downstream 11164 true Chr06: 59068060-59079223 Sorghum bicolor
Sobic.006G252900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 59068060-59069059 Sorghum bicolor
Sobic.006G252900 2.0kb upstream 2.0kb upstream 12164 true Chr06: 59069060-59081223 Sorghum bicolor
Sobic.006G252900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 59079224-59081223 Sorghum bicolor
Sobic.006G252900 2.0kb downstream 2.0kb downstream 12164 true Chr06: 59067060-59079223 Sorghum bicolor
Sobic.006G252900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 59067060-59069059 Sorghum bicolor
Sobic.006G252900 5.0kb upstream 5.0kb upstream 15164 true Chr06: 59069060-59084223 Sorghum bicolor
Sobic.006G252900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 59079224-59084223 Sorghum bicolor
Sobic.006G252900 5.0kb downstream 5.0kb downstream 15164 true Chr06: 59064060-59079223 Sorghum bicolor
Sobic.006G252900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 59064060-59069059 Sorghum bicolor
Sobic.006G252900 10.0kb upstream 10.0kb upstream 20164 true Chr06: 59069060-59089223 Sorghum bicolor
Sobic.006G252900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 59079224-59089223 Sorghum bicolor
Sobic.006G252900 10.0kb downstream 10.0kb downstream 20164 true Chr06: 59059060-59079223 Sorghum bicolor
Sobic.006G252900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 59059060-59069059 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180840 5267 Panicoideae View MSA
124576147 5269 Grass View MSA
122045332 5273 Angiosperm View MSA
121348646 5274 Embryophyte View MSA
123427478 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.591        
cufflinks 2.018       Low
cufflinks 3.718        
cufflinks 3.32        
cufflinks 4.943       High
cufflinks 3.527        
cufflinks 3.122        
cufflinks 1.558       Low
cufflinks 6.193       High
cufflinks 5.94       High
cufflinks 2.801        
cufflinks 3.204        
cufflinks 5.387       High
cufflinks 3.014        
cufflinks 4.441        
cufflinks 2.989        
cufflinks 2.941        
cufflinks 3.2        
cufflinks 3.866        
cufflinks 3.275        
cufflinks 5.793       High
cufflinks 3.571        
cufflinks 2.96        
cufflinks 3.107        
cufflinks 3.723        
cufflinks 1.777       Low
cufflinks 3.937        
cufflinks 3.0        
cufflinks 2.565        
cufflinks 4.764       High

0 Strain