Gene : Sobic.004G004400 S. bicolor v3.1.1
Defline:  (1 of 2) 1.1.1.27 - L-lactate dehydrogenase / L-lactic dehydrogenase Genomic Order:  41
Name:  ? Sobic.004G004400 Secondary Identifier:  ? PAC:37933630
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ANAEROFRUCAT-PWY Sorghum bicolor pathologic  
Sbicolor PWY-5481 Sorghum bicolor pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G004400 0.5kb upstream 0.5kb upstream 5122 true Chr04: 386308-391429 Sorghum bicolor
Sobic.004G004400 0.5kb upstream 0.5kb upstream 500 false Chr04: 386308-386807 Sorghum bicolor
Sobic.004G004400 0.5kb downstream 0.5kb downstream 5122 true Chr04: 386808-391929 Sorghum bicolor
Sobic.004G004400 0.5kb downstream 0.5kb downstream 500 false Chr04: 391430-391929 Sorghum bicolor
Sobic.004G004400 1.0kb upstream 1.0kb upstream 5622 true Chr04: 385808-391429 Sorghum bicolor
Sobic.004G004400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 385808-386807 Sorghum bicolor
Sobic.004G004400 1.0kb downstream 1.0kb downstream 5622 true Chr04: 386808-392429 Sorghum bicolor
Sobic.004G004400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 391430-392429 Sorghum bicolor
Sobic.004G004400 2.0kb upstream 2.0kb upstream 6622 true Chr04: 384808-391429 Sorghum bicolor
Sobic.004G004400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 384808-386807 Sorghum bicolor
Sobic.004G004400 2.0kb downstream 2.0kb downstream 6622 true Chr04: 386808-393429 Sorghum bicolor
Sobic.004G004400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 391430-393429 Sorghum bicolor
Sobic.004G004400 5.0kb upstream 5.0kb upstream 9622 true Chr04: 381808-391429 Sorghum bicolor
Sobic.004G004400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 381808-386807 Sorghum bicolor
Sobic.004G004400 5.0kb downstream 5.0kb downstream 9622 true Chr04: 386808-396429 Sorghum bicolor
Sobic.004G004400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 391430-396429 Sorghum bicolor
Sobic.004G004400 10.0kb upstream 10.0kb upstream 14622 true Chr04: 376808-391429 Sorghum bicolor
Sobic.004G004400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 376808-386807 Sorghum bicolor
Sobic.004G004400 10.0kb downstream 10.0kb downstream 14622 true Chr04: 386808-401429 Sorghum bicolor
Sobic.004G004400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 391430-401429 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196123 5267 Panicoideae View MSA
124573849 5269 Grass View MSA
122045770 5273 Angiosperm View MSA
121350532 5274 Embryophyte View MSA
123381776 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.77     High High
cufflinks 1.499       Low
cufflinks 3.96        
cufflinks 7.074        
cufflinks 3.757        
cufflinks 2.462        
cufflinks 2.64        
cufflinks 1.109       Low
cufflinks 3.953        
cufflinks 4.628        
cufflinks 5.7        
cufflinks 5.862        
cufflinks 5.13        
cufflinks 9.203       High
cufflinks 2.117        
cufflinks 2.285        
cufflinks 2.119        
cufflinks 1.741       Low
cufflinks 4.324        
cufflinks 2.565        
cufflinks 2.374        
cufflinks 12.91     High High
cufflinks 5.409        
cufflinks 4.988        
cufflinks 4.052        
cufflinks 1.3       Low
cufflinks 8.458        
cufflinks 0.627       Low
cufflinks 0.752       Low
cufflinks 2.688        

0 Strain