Gene : Sobic.004G061800 S. bicolor v3.1.1
Defline:  (1 of 3) 2.1.1.183 - 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase Genomic Order:  638
Name:  ? Sobic.004G061800 Secondary Identifier:  ? PAC:37930916
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G061800 0.5kb upstream 0.5kb upstream 2966 true Chr04: 4985294-4988259 Sorghum bicolor
Sobic.004G061800 0.5kb upstream 0.5kb upstream 500 false Chr04: 4985294-4985793 Sorghum bicolor
Sobic.004G061800 0.5kb downstream 0.5kb downstream 2966 true Chr04: 4985794-4988759 Sorghum bicolor
Sobic.004G061800 0.5kb downstream 0.5kb downstream 500 false Chr04: 4988260-4988759 Sorghum bicolor
Sobic.004G061800 1.0kb upstream 1.0kb upstream 3466 true Chr04: 4984794-4988259 Sorghum bicolor
Sobic.004G061800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4984794-4985793 Sorghum bicolor
Sobic.004G061800 1.0kb downstream 1.0kb downstream 3466 true Chr04: 4985794-4989259 Sorghum bicolor
Sobic.004G061800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4988260-4989259 Sorghum bicolor
Sobic.004G061800 2.0kb upstream 2.0kb upstream 4466 true Chr04: 4983794-4988259 Sorghum bicolor
Sobic.004G061800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4983794-4985793 Sorghum bicolor
Sobic.004G061800 2.0kb downstream 2.0kb downstream 4466 true Chr04: 4985794-4990259 Sorghum bicolor
Sobic.004G061800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4988260-4990259 Sorghum bicolor
Sobic.004G061800 5.0kb upstream 5.0kb upstream 7466 true Chr04: 4980794-4988259 Sorghum bicolor
Sobic.004G061800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4980794-4985793 Sorghum bicolor
Sobic.004G061800 5.0kb downstream 5.0kb downstream 7466 true Chr04: 4985794-4993259 Sorghum bicolor
Sobic.004G061800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 4988260-4993259 Sorghum bicolor
Sobic.004G061800 10.0kb upstream 10.0kb upstream 12466 true Chr04: 4975794-4988259 Sorghum bicolor
Sobic.004G061800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4975794-4985793 Sorghum bicolor
Sobic.004G061800 10.0kb downstream 10.0kb downstream 12466 true Chr04: 4985794-4998259 Sorghum bicolor
Sobic.004G061800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 4988260-4998259 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195897 5267 Panicoideae View MSA
124577588 5269 Grass View MSA
122042142 5273 Angiosperm View MSA
121344705 5274 Embryophyte View MSA
123426456 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.064     High High
cufflinks 1.988       Low
cufflinks 3.265       Low
cufflinks 8.412        
cufflinks 14.386     High  
cufflinks 12.56        
cufflinks 7.926        
cufflinks 2.663       Low
cufflinks 21.401     High High
cufflinks 17.752     High  
cufflinks 10.197        
cufflinks 13.058     High  
cufflinks 14.004     High  
cufflinks 13.224     High  
cufflinks 7.387        
cufflinks 4.013       Low
cufflinks 8.766        
cufflinks 8.015        
cufflinks 3.513       Low
cufflinks 10.907        
cufflinks 16.29     High  
cufflinks 14.957     High  
cufflinks 13.585     High  
cufflinks 13.157     High  
cufflinks 2.512       Low
cufflinks 1.405       Low
cufflinks 7.608        
cufflinks 17.256     High  
cufflinks 6.132        
cufflinks 8.953        

0 Strain