Gene : Sobic.004G058400 S. bicolor v3.1.1
Defline:  (1 of 1) 2.1.1.191 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase / rRNA large subunit methyltransferase I Genomic Order:  607
Name:  ? Sobic.004G058400 Secondary Identifier:  ? PAC:37929219
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G058400 0.5kb upstream 0.5kb upstream 4941 true Chr04: 4675339-4680279 Sorghum bicolor
Sobic.004G058400 0.5kb upstream 0.5kb upstream 500 false Chr04: 4675339-4675838 Sorghum bicolor
Sobic.004G058400 0.5kb downstream 0.5kb downstream 4941 true Chr04: 4675839-4680779 Sorghum bicolor
Sobic.004G058400 0.5kb downstream 0.5kb downstream 500 false Chr04: 4680280-4680779 Sorghum bicolor
Sobic.004G058400 1.0kb upstream 1.0kb upstream 5441 true Chr04: 4674839-4680279 Sorghum bicolor
Sobic.004G058400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4674839-4675838 Sorghum bicolor
Sobic.004G058400 1.0kb downstream 1.0kb downstream 5441 true Chr04: 4675839-4681279 Sorghum bicolor
Sobic.004G058400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4680280-4681279 Sorghum bicolor
Sobic.004G058400 2.0kb upstream 2.0kb upstream 6441 true Chr04: 4673839-4680279 Sorghum bicolor
Sobic.004G058400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4673839-4675838 Sorghum bicolor
Sobic.004G058400 2.0kb downstream 2.0kb downstream 6441 true Chr04: 4675839-4682279 Sorghum bicolor
Sobic.004G058400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4680280-4682279 Sorghum bicolor
Sobic.004G058400 5.0kb upstream 5.0kb upstream 9441 true Chr04: 4670839-4680279 Sorghum bicolor
Sobic.004G058400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4670839-4675838 Sorghum bicolor
Sobic.004G058400 5.0kb downstream 5.0kb downstream 9441 true Chr04: 4675839-4685279 Sorghum bicolor
Sobic.004G058400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 4680280-4685279 Sorghum bicolor
Sobic.004G058400 10.0kb upstream 10.0kb upstream 14441 true Chr04: 4665839-4680279 Sorghum bicolor
Sobic.004G058400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4665839-4675838 Sorghum bicolor
Sobic.004G058400 10.0kb downstream 10.0kb downstream 14441 true Chr04: 4675839-4690279 Sorghum bicolor
Sobic.004G058400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 4680280-4690279 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182429 5267 Panicoideae View MSA
124579399 5269 Grass View MSA
122042200 5273 Angiosperm View MSA
121348163 5274 Embryophyte View MSA
123426103 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.366        
cufflinks 0.997       Low
cufflinks 3.036        
cufflinks 3.363        
cufflinks 4.554       High
cufflinks 2.897        
cufflinks 3.602        
cufflinks 2.73        
cufflinks 2.431        
cufflinks 2.689        
cufflinks 0.939       Low
cufflinks 1.191       Low
cufflinks 2.669        
cufflinks 1.037       Low
cufflinks 2.374        
cufflinks 2.115        
cufflinks 3.678       High
cufflinks 4.2       High
cufflinks 1.736        
cufflinks 2.674        
cufflinks 4.454       High
cufflinks 1.091       Low
cufflinks 1.045       Low
cufflinks 1.041       Low
cufflinks 1.782        
cufflinks 1.145       Low
cufflinks 1.391        
cufflinks 1.074       Low
cufflinks 7.221       High
cufflinks 2.758        

0 Strain