Gene : Sobic.004G056400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED Genomic Order:  587
Name:  ? Sobic.004G056400 Secondary Identifier:  ? PAC:37930147
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6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ANAEROFRUCAT-PWY Sorghum bicolor pathologic  
Sbicolor ANAGLYCOLYSIS-PWY Sorghum bicolor pathologic  
Sbicolor GLUCONEO-PWY Sorghum bicolor pathologic  
Sbicolor PWY-1042 Sorghum bicolor pathologic  
Sbicolor PWY-5464 Sorghum bicolor pathologic  
Sbicolor SUCSYN-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G056400 0.5kb upstream 0.5kb upstream 5894 true Chr04: 4540373-4546266 Sorghum bicolor
Sobic.004G056400 0.5kb upstream 0.5kb upstream 500 false Chr04: 4540373-4540872 Sorghum bicolor
Sobic.004G056400 0.5kb downstream 0.5kb downstream 5894 true Chr04: 4540873-4546766 Sorghum bicolor
Sobic.004G056400 0.5kb downstream 0.5kb downstream 500 false Chr04: 4546267-4546766 Sorghum bicolor
Sobic.004G056400 1.0kb upstream 1.0kb upstream 6394 true Chr04: 4539873-4546266 Sorghum bicolor
Sobic.004G056400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4539873-4540872 Sorghum bicolor
Sobic.004G056400 1.0kb downstream 1.0kb downstream 6394 true Chr04: 4540873-4547266 Sorghum bicolor
Sobic.004G056400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4546267-4547266 Sorghum bicolor
Sobic.004G056400 2.0kb upstream 2.0kb upstream 7394 true Chr04: 4538873-4546266 Sorghum bicolor
Sobic.004G056400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4538873-4540872 Sorghum bicolor
Sobic.004G056400 2.0kb downstream 2.0kb downstream 7394 true Chr04: 4540873-4548266 Sorghum bicolor
Sobic.004G056400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4546267-4548266 Sorghum bicolor
Sobic.004G056400 5.0kb upstream 5.0kb upstream 10394 true Chr04: 4535873-4546266 Sorghum bicolor
Sobic.004G056400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4535873-4540872 Sorghum bicolor
Sobic.004G056400 5.0kb downstream 5.0kb downstream 10394 true Chr04: 4540873-4551266 Sorghum bicolor
Sobic.004G056400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 4546267-4551266 Sorghum bicolor
Sobic.004G056400 10.0kb upstream 10.0kb upstream 15394 true Chr04: 4530873-4546266 Sorghum bicolor
Sobic.004G056400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4530873-4540872 Sorghum bicolor
Sobic.004G056400 10.0kb downstream 10.0kb downstream 15394 true Chr04: 4540873-4556266 Sorghum bicolor
Sobic.004G056400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 4546267-4556266 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175260 5267 Panicoideae View MSA
124572618 5269 Grass View MSA
122042179 5273 Angiosperm View MSA
121345581 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 60.552     High High
cufflinks 9.782     High Low
cufflinks 9.748     High Low
cufflinks 13.258     High Low
cufflinks 33.496     High  
cufflinks 10.3       Low
cufflinks 24.05     High  
cufflinks 14.757     High  
cufflinks 27.139     High  
cufflinks 35.533     High  
cufflinks 59.529     High High
cufflinks 39.086     High  
cufflinks 32.127     High  
cufflinks 55.717     High High
cufflinks 22.567     High  
cufflinks 10.481     High Low
cufflinks 26.689     High  
cufflinks 27.507     High  
cufflinks 12.698     High Low
cufflinks 21.848     High  
cufflinks 35.449     High  
cufflinks 68.903     High High
cufflinks 63.401     High High
cufflinks 65.736     High High
cufflinks 8.935     High Low
cufflinks 11.388     High Low
cufflinks 53.593     High  
cufflinks 15.924     High  
cufflinks 17.372     High  
cufflinks 34.903     High  

0 Strain