Gene : Sobic.004G050300 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10668//PTHR10668:SF83 - PHYTOENE DEHYDROGENASE // PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 2 Genomic Order:  525
Name:  ? Sobic.004G050300 Secondary Identifier:  ? PAC:37932616
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G050300 0.5kb upstream 0.5kb upstream 5747 true Chr04: 4054868-4060614 Sorghum bicolor
Sobic.004G050300 0.5kb upstream 0.5kb upstream 500 false Chr04: 4060115-4060614 Sorghum bicolor
Sobic.004G050300 0.5kb downstream 0.5kb downstream 5747 true Chr04: 4054368-4060114 Sorghum bicolor
Sobic.004G050300 0.5kb downstream 0.5kb downstream 500 false Chr04: 4054368-4054867 Sorghum bicolor
Sobic.004G050300 1.0kb upstream 1.0kb upstream 6247 true Chr04: 4054868-4061114 Sorghum bicolor
Sobic.004G050300 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4060115-4061114 Sorghum bicolor
Sobic.004G050300 1.0kb downstream 1.0kb downstream 6247 true Chr04: 4053868-4060114 Sorghum bicolor
Sobic.004G050300 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4053868-4054867 Sorghum bicolor
Sobic.004G050300 2.0kb upstream 2.0kb upstream 7247 true Chr04: 4054868-4062114 Sorghum bicolor
Sobic.004G050300 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4060115-4062114 Sorghum bicolor
Sobic.004G050300 2.0kb downstream 2.0kb downstream 7247 true Chr04: 4052868-4060114 Sorghum bicolor
Sobic.004G050300 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4052868-4054867 Sorghum bicolor
Sobic.004G050300 5.0kb upstream 5.0kb upstream 10247 true Chr04: 4054868-4065114 Sorghum bicolor
Sobic.004G050300 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4060115-4065114 Sorghum bicolor
Sobic.004G050300 5.0kb downstream 5.0kb downstream 10247 true Chr04: 4049868-4060114 Sorghum bicolor
Sobic.004G050300 5.0kb downstream 5.0kb downstream 5000 false Chr04: 4049868-4054867 Sorghum bicolor
Sobic.004G050300 10.0kb upstream 10.0kb upstream 15247 true Chr04: 4054868-4070114 Sorghum bicolor
Sobic.004G050300 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4060115-4070114 Sorghum bicolor
Sobic.004G050300 10.0kb downstream 10.0kb downstream 15247 true Chr04: 4044868-4060114 Sorghum bicolor
Sobic.004G050300 10.0kb downstream 10.0kb downstream 10000 false Chr04: 4044868-4054867 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190923 5267 Panicoideae View MSA
124580304 5269 Grass View MSA
122043092 5273 Angiosperm View MSA
121344165 5274 Embryophyte View MSA
123379989 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.49        
cufflinks 0.14       Low
cufflinks 0.611       Low
cufflinks 1.464        
cufflinks 5.331        
cufflinks 3.009        
cufflinks 2.058        
cufflinks 0.715       Low
cufflinks 6.582        
cufflinks 6.896        
cufflinks 4.23        
cufflinks 3.82        
cufflinks 4.088        
cufflinks 4.168        
cufflinks 2.695        
cufflinks 0.276       Low
cufflinks 2.114        
cufflinks 2.876        
cufflinks 0.692       Low
cufflinks 1.519        
cufflinks 8.991       High
cufflinks 4.869        
cufflinks 4.302        
cufflinks 4.696        
cufflinks 0.158       Low
cufflinks 0.16       Low
cufflinks 4.194        
cufflinks 2.731        
cufflinks 2.375        
cufflinks 4.281        

0 Strain