Gene : Sobic.004G037800 S. bicolor v3.1.1
Defline:  (1 of 14) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  397
Name:  ? Sobic.004G037800 Secondary Identifier:  ? PAC:37931713
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G037800 0.5kb upstream 0.5kb upstream 7796 true Chr04: 3057815-3065610 Sorghum bicolor
Sobic.004G037800 0.5kb upstream 0.5kb upstream 500 false Chr04: 3065111-3065610 Sorghum bicolor
Sobic.004G037800 0.5kb downstream 0.5kb downstream 7796 true Chr04: 3057315-3065110 Sorghum bicolor
Sobic.004G037800 0.5kb downstream 0.5kb downstream 500 false Chr04: 3057315-3057814 Sorghum bicolor
Sobic.004G037800 1.0kb upstream 1.0kb upstream 8296 true Chr04: 3057815-3066110 Sorghum bicolor
Sobic.004G037800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 3065111-3066110 Sorghum bicolor
Sobic.004G037800 1.0kb downstream 1.0kb downstream 8296 true Chr04: 3056815-3065110 Sorghum bicolor
Sobic.004G037800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 3056815-3057814 Sorghum bicolor
Sobic.004G037800 2.0kb upstream 2.0kb upstream 9296 true Chr04: 3057815-3067110 Sorghum bicolor
Sobic.004G037800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 3065111-3067110 Sorghum bicolor
Sobic.004G037800 2.0kb downstream 2.0kb downstream 9296 true Chr04: 3055815-3065110 Sorghum bicolor
Sobic.004G037800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 3055815-3057814 Sorghum bicolor
Sobic.004G037800 5.0kb upstream 5.0kb upstream 12296 true Chr04: 3057815-3070110 Sorghum bicolor
Sobic.004G037800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 3065111-3070110 Sorghum bicolor
Sobic.004G037800 5.0kb downstream 5.0kb downstream 12296 true Chr04: 3052815-3065110 Sorghum bicolor
Sobic.004G037800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 3052815-3057814 Sorghum bicolor
Sobic.004G037800 10.0kb upstream 10.0kb upstream 17296 true Chr04: 3057815-3075110 Sorghum bicolor
Sobic.004G037800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 3065111-3075110 Sorghum bicolor
Sobic.004G037800 10.0kb downstream 10.0kb downstream 17296 true Chr04: 3047815-3065110 Sorghum bicolor
Sobic.004G037800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 3047815-3057814 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197185 5267 Panicoideae View MSA
124574675 5269 Grass View MSA
122042731 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.099       Low
cufflinks 1.009       Low
cufflinks 0.171       Low
cufflinks 0.619       Low
cufflinks 31.582     High  
cufflinks 3.84        
cufflinks 6.737        
cufflinks 6.39        
cufflinks 45.473     High High
cufflinks 43.517     High High
cufflinks 7.931        
cufflinks 10.783        
cufflinks 48.897     High High
cufflinks 10.433        
cufflinks 22.582     High  
cufflinks 0.247       Low
cufflinks 5.519        
cufflinks 6.008        
cufflinks 2.196        
cufflinks 6.491        
cufflinks 47.741     High High
cufflinks 14.565     High  
cufflinks 9.788        
cufflinks 10.749        
cufflinks 8.526        
cufflinks 4.033        
cufflinks 4.558        
cufflinks 0.27       Low
cufflinks 9.64        
cufflinks 22.641     High  

0 Strain