Gene : Sobic.004G073000 S. bicolor v3.1.1
Defline:  (1 of 10) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  759
Name:  ? Sobic.004G073000 Secondary Identifier:  ? PAC:37932991
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G073000 0.5kb upstream 0.5kb upstream 6809 true Chr04: 5879307-5886115 Sorghum bicolor
Sobic.004G073000 0.5kb upstream 0.5kb upstream 500 false Chr04: 5885616-5886115 Sorghum bicolor
Sobic.004G073000 0.5kb downstream 0.5kb downstream 6809 true Chr04: 5878807-5885615 Sorghum bicolor
Sobic.004G073000 0.5kb downstream 0.5kb downstream 500 false Chr04: 5878807-5879306 Sorghum bicolor
Sobic.004G073000 1.0kb upstream 1.0kb upstream 7309 true Chr04: 5879307-5886615 Sorghum bicolor
Sobic.004G073000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 5885616-5886615 Sorghum bicolor
Sobic.004G073000 1.0kb downstream 1.0kb downstream 7309 true Chr04: 5878307-5885615 Sorghum bicolor
Sobic.004G073000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 5878307-5879306 Sorghum bicolor
Sobic.004G073000 2.0kb upstream 2.0kb upstream 8309 true Chr04: 5879307-5887615 Sorghum bicolor
Sobic.004G073000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 5885616-5887615 Sorghum bicolor
Sobic.004G073000 2.0kb downstream 2.0kb downstream 8309 true Chr04: 5877307-5885615 Sorghum bicolor
Sobic.004G073000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 5877307-5879306 Sorghum bicolor
Sobic.004G073000 5.0kb upstream 5.0kb upstream 11309 true Chr04: 5879307-5890615 Sorghum bicolor
Sobic.004G073000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 5885616-5890615 Sorghum bicolor
Sobic.004G073000 5.0kb downstream 5.0kb downstream 11309 true Chr04: 5874307-5885615 Sorghum bicolor
Sobic.004G073000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 5874307-5879306 Sorghum bicolor
Sobic.004G073000 10.0kb upstream 10.0kb upstream 16309 true Chr04: 5879307-5895615 Sorghum bicolor
Sobic.004G073000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 5885616-5895615 Sorghum bicolor
Sobic.004G073000 10.0kb downstream 10.0kb downstream 16309 true Chr04: 5869307-5885615 Sorghum bicolor
Sobic.004G073000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 5869307-5879306 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027025 5273 Angiosperm View MSA
122177029 5267 Panicoideae View MSA
124586891 5269 Grass View MSA
121296748 5274 Embryophyte View MSA
123334866 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.292        
cufflinks 0.034     Low Low
cufflinks 0.035     Low Low
cufflinks 0.024     Low Low
cufflinks 5.232       High
cufflinks 0.199        
cufflinks 0.851        
cufflinks 0.309        
cufflinks 0.051     Low Low
cufflinks 0.089        
cufflinks 0.999        
cufflinks 0.527        
cufflinks 0.518        
cufflinks 1.232        
cufflinks 1.206        
cufflinks 0.004     Low Low
cufflinks 0.763        
cufflinks 0.563        
cufflinks 0.37        
cufflinks 0.622        
cufflinks 0.371        
cufflinks 2.136        
cufflinks 0.875        
cufflinks 0.896        
cufflinks 0.012     Low Low
cufflinks 0.044       Low
cufflinks 0.786        
cufflinks 0.23        
cufflinks 2.002        
cufflinks 1.911        

0 Strain