Gene : Sobic.009G004400 S. bicolor v3.1.1
Defline:  (1 of 1) K07442 - tRNA (adenine57-N1/adenine58-N1)-methyltransferase [EC:2.1.1.219 2.1.1.220] (TRM61, GCD14) Genomic Order:  42
Name:  ? Sobic.009G004400 Secondary Identifier:  ? PAC:37922159
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6829 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G004400 0.5kb upstream 0.5kb upstream 3279 true Chr09: 385711-388989 Sorghum bicolor
Sobic.009G004400 0.5kb upstream 0.5kb upstream 500 false Chr09: 388490-388989 Sorghum bicolor
Sobic.009G004400 0.5kb downstream 0.5kb downstream 3279 true Chr09: 385211-388489 Sorghum bicolor
Sobic.009G004400 0.5kb downstream 0.5kb downstream 500 false Chr09: 385211-385710 Sorghum bicolor
Sobic.009G004400 1.0kb upstream 1.0kb upstream 3779 true Chr09: 385711-389489 Sorghum bicolor
Sobic.009G004400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 388490-389489 Sorghum bicolor
Sobic.009G004400 1.0kb downstream 1.0kb downstream 3779 true Chr09: 384711-388489 Sorghum bicolor
Sobic.009G004400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 384711-385710 Sorghum bicolor
Sobic.009G004400 2.0kb upstream 2.0kb upstream 4779 true Chr09: 385711-390489 Sorghum bicolor
Sobic.009G004400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 388490-390489 Sorghum bicolor
Sobic.009G004400 2.0kb downstream 2.0kb downstream 4779 true Chr09: 383711-388489 Sorghum bicolor
Sobic.009G004400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 383711-385710 Sorghum bicolor
Sobic.009G004400 5.0kb upstream 5.0kb upstream 7779 true Chr09: 385711-393489 Sorghum bicolor
Sobic.009G004400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 388490-393489 Sorghum bicolor
Sobic.009G004400 5.0kb downstream 5.0kb downstream 7779 true Chr09: 380711-388489 Sorghum bicolor
Sobic.009G004400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 380711-385710 Sorghum bicolor
Sobic.009G004400 10.0kb upstream 10.0kb upstream 12779 true Chr09: 385711-398489 Sorghum bicolor
Sobic.009G004400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 388490-398489 Sorghum bicolor
Sobic.009G004400 10.0kb downstream 10.0kb downstream 12779 true Chr09: 375711-388489 Sorghum bicolor
Sobic.009G004400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 375711-385710 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186716 5267 Panicoideae View MSA
124583241 5269 Grass View MSA
122045272 5273 Angiosperm View MSA
121345508 5274 Embryophyte View MSA
123423922 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.846       High
cufflinks 0.459       Low
cufflinks 1.263        
cufflinks 1.658        
cufflinks 2.364        
cufflinks 3.981       High
cufflinks 1.812        
cufflinks 0.593       Low
cufflinks 2.633        
cufflinks 2.406        
cufflinks 1.713        
cufflinks 1.752        
cufflinks 2.069        
cufflinks 2.17        
cufflinks 1.864        
cufflinks 2.592        
cufflinks 1.791        
cufflinks 1.759        
cufflinks 0.731       Low
cufflinks 1.839        
cufflinks 2.632        
cufflinks 3.016        
cufflinks 2.169        
cufflinks 2.322        
cufflinks 1.73        
cufflinks 0.577       Low
cufflinks 1.111        
cufflinks 5.494       High
cufflinks 1.013       Low
cufflinks 2.647        

0 Strain