Gene : Sobic.004G175300 S. bicolor v3.1.1
Defline:  (1 of 1) K03660 - N-glycosylase/DNA lyase (OGG1) Genomic Order:  1824
Name:  ? Sobic.004G175300 Secondary Identifier:  ? PAC:37932154
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G175300 0.5kb upstream 0.5kb upstream 6539 true Chr04: 52759107-52765645 Sorghum bicolor
Sobic.004G175300 0.5kb upstream 0.5kb upstream 500 false Chr04: 52765146-52765645 Sorghum bicolor
Sobic.004G175300 0.5kb downstream 0.5kb downstream 6539 true Chr04: 52758607-52765145 Sorghum bicolor
Sobic.004G175300 0.5kb downstream 0.5kb downstream 500 false Chr04: 52758607-52759106 Sorghum bicolor
Sobic.004G175300 1.0kb upstream 1.0kb upstream 7039 true Chr04: 52759107-52766145 Sorghum bicolor
Sobic.004G175300 1.0kb upstream 1.0kb upstream 1000 false Chr04: 52765146-52766145 Sorghum bicolor
Sobic.004G175300 1.0kb downstream 1.0kb downstream 7039 true Chr04: 52758107-52765145 Sorghum bicolor
Sobic.004G175300 1.0kb downstream 1.0kb downstream 1000 false Chr04: 52758107-52759106 Sorghum bicolor
Sobic.004G175300 2.0kb upstream 2.0kb upstream 8039 true Chr04: 52759107-52767145 Sorghum bicolor
Sobic.004G175300 2.0kb upstream 2.0kb upstream 2000 false Chr04: 52765146-52767145 Sorghum bicolor
Sobic.004G175300 2.0kb downstream 2.0kb downstream 8039 true Chr04: 52757107-52765145 Sorghum bicolor
Sobic.004G175300 2.0kb downstream 2.0kb downstream 2000 false Chr04: 52757107-52759106 Sorghum bicolor
Sobic.004G175300 5.0kb upstream 5.0kb upstream 11039 true Chr04: 52759107-52770145 Sorghum bicolor
Sobic.004G175300 5.0kb upstream 5.0kb upstream 5000 false Chr04: 52765146-52770145 Sorghum bicolor
Sobic.004G175300 5.0kb downstream 5.0kb downstream 11039 true Chr04: 52754107-52765145 Sorghum bicolor
Sobic.004G175300 5.0kb downstream 5.0kb downstream 5000 false Chr04: 52754107-52759106 Sorghum bicolor
Sobic.004G175300 10.0kb upstream 10.0kb upstream 16039 true Chr04: 52759107-52775145 Sorghum bicolor
Sobic.004G175300 10.0kb upstream 10.0kb upstream 10000 false Chr04: 52765146-52775145 Sorghum bicolor
Sobic.004G175300 10.0kb downstream 10.0kb downstream 16039 true Chr04: 52749107-52765145 Sorghum bicolor
Sobic.004G175300 10.0kb downstream 10.0kb downstream 10000 false Chr04: 52749107-52759106 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182459 5267 Panicoideae View MSA
124581269 5269 Grass View MSA
122046442 5273 Angiosperm View MSA
121344747 5274 Embryophyte View MSA
123428453 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.495       High
cufflinks 0.697       Low
cufflinks 1.283        
cufflinks 2.22       High
cufflinks 1.193        
cufflinks 4.006       High
cufflinks 1.005        
cufflinks 0.996        
cufflinks 2.19       High
cufflinks 1.769        
cufflinks 1.14        
cufflinks 1.556        
cufflinks 1.859        
cufflinks 1.535        
cufflinks 1.71        
cufflinks 1.009        
cufflinks 1.037        
cufflinks 1.126        
cufflinks 0.77       Low
cufflinks 1.309        
cufflinks 1.915        
cufflinks 1.314        
cufflinks 1.408        
cufflinks 1.274        
cufflinks 1.317        
cufflinks 0.857       Low
cufflinks 1.309        
cufflinks 2.437       High
cufflinks 1.242        
cufflinks 1.613        

0 Strain