Gene : Sobic.004G171700 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR22849//PTHR22849:SF26 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1791
Name:  ? Sobic.004G171700 Secondary Identifier:  ? PAC:37933527
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7511 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G171700 0.5kb upstream 0.5kb upstream 1724 true Chr04: 52422097-52423820 Sorghum bicolor
Sobic.004G171700 0.5kb upstream 0.5kb upstream 500 false Chr04: 52423321-52423820 Sorghum bicolor
Sobic.004G171700 0.5kb downstream 0.5kb downstream 1724 true Chr04: 52421597-52423320 Sorghum bicolor
Sobic.004G171700 0.5kb downstream 0.5kb downstream 500 false Chr04: 52421597-52422096 Sorghum bicolor
Sobic.004G171700 1.0kb upstream 1.0kb upstream 2224 true Chr04: 52422097-52424320 Sorghum bicolor
Sobic.004G171700 1.0kb upstream 1.0kb upstream 1000 false Chr04: 52423321-52424320 Sorghum bicolor
Sobic.004G171700 1.0kb downstream 1.0kb downstream 2224 true Chr04: 52421097-52423320 Sorghum bicolor
Sobic.004G171700 1.0kb downstream 1.0kb downstream 1000 false Chr04: 52421097-52422096 Sorghum bicolor
Sobic.004G171700 2.0kb upstream 2.0kb upstream 3224 true Chr04: 52422097-52425320 Sorghum bicolor
Sobic.004G171700 2.0kb upstream 2.0kb upstream 2000 false Chr04: 52423321-52425320 Sorghum bicolor
Sobic.004G171700 2.0kb downstream 2.0kb downstream 3224 true Chr04: 52420097-52423320 Sorghum bicolor
Sobic.004G171700 2.0kb downstream 2.0kb downstream 2000 false Chr04: 52420097-52422096 Sorghum bicolor
Sobic.004G171700 5.0kb upstream 5.0kb upstream 6224 true Chr04: 52422097-52428320 Sorghum bicolor
Sobic.004G171700 5.0kb upstream 5.0kb upstream 5000 false Chr04: 52423321-52428320 Sorghum bicolor
Sobic.004G171700 5.0kb downstream 5.0kb downstream 6224 true Chr04: 52417097-52423320 Sorghum bicolor
Sobic.004G171700 5.0kb downstream 5.0kb downstream 5000 false Chr04: 52417097-52422096 Sorghum bicolor
Sobic.004G171700 10.0kb upstream 10.0kb upstream 11224 true Chr04: 52422097-52433320 Sorghum bicolor
Sobic.004G171700 10.0kb upstream 10.0kb upstream 10000 false Chr04: 52423321-52433320 Sorghum bicolor
Sobic.004G171700 10.0kb downstream 10.0kb downstream 11224 true Chr04: 52412097-52423320 Sorghum bicolor
Sobic.004G171700 10.0kb downstream 10.0kb downstream 10000 false Chr04: 52412097-52422096 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188628 5267 Panicoideae View MSA
124578185 5269 Grass View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.596        
cufflinks 0.896       Low
cufflinks 2.153        
cufflinks 1.823        
cufflinks 22.768     High High
cufflinks 19.295     High High
cufflinks 1.501        
cufflinks 2.397        
cufflinks 9.061        
cufflinks 2.645        
cufflinks 11.546        
cufflinks 3.243        
cufflinks 9.745        
cufflinks 3.166        
cufflinks 4.903        
cufflinks 0.443       Low
cufflinks 1.113       Low
cufflinks 1.017       Low
cufflinks 8.819        
cufflinks 0.954       Low
cufflinks 4.35        
cufflinks 4.954        
cufflinks 2.158        
cufflinks 2.493        
cufflinks 1.486        
cufflinks 1.344        
cufflinks 5.559        
cufflinks 0.092       Low
cufflinks 4.576        
cufflinks 4.741        

0 Strain