Gene : Sobic.004G162400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11638//PTHR11638:SF107 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED Genomic Order:  1693
Name:  ? Sobic.004G162400 Secondary Identifier:  ? PAC:37931372
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G162400 0.5kb upstream 0.5kb upstream 5286 true Chr04: 51171362-51176647 Sorghum bicolor
Sobic.004G162400 0.5kb upstream 0.5kb upstream 500 false Chr04: 51171362-51171861 Sorghum bicolor
Sobic.004G162400 0.5kb downstream 0.5kb downstream 5286 true Chr04: 51171862-51177147 Sorghum bicolor
Sobic.004G162400 0.5kb downstream 0.5kb downstream 500 false Chr04: 51176648-51177147 Sorghum bicolor
Sobic.004G162400 1.0kb upstream 1.0kb upstream 5786 true Chr04: 51170862-51176647 Sorghum bicolor
Sobic.004G162400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 51170862-51171861 Sorghum bicolor
Sobic.004G162400 1.0kb downstream 1.0kb downstream 5786 true Chr04: 51171862-51177647 Sorghum bicolor
Sobic.004G162400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 51176648-51177647 Sorghum bicolor
Sobic.004G162400 2.0kb upstream 2.0kb upstream 6786 true Chr04: 51169862-51176647 Sorghum bicolor
Sobic.004G162400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 51169862-51171861 Sorghum bicolor
Sobic.004G162400 2.0kb downstream 2.0kb downstream 6786 true Chr04: 51171862-51178647 Sorghum bicolor
Sobic.004G162400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 51176648-51178647 Sorghum bicolor
Sobic.004G162400 5.0kb upstream 5.0kb upstream 9786 true Chr04: 51166862-51176647 Sorghum bicolor
Sobic.004G162400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 51166862-51171861 Sorghum bicolor
Sobic.004G162400 5.0kb downstream 5.0kb downstream 9786 true Chr04: 51171862-51181647 Sorghum bicolor
Sobic.004G162400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 51176648-51181647 Sorghum bicolor
Sobic.004G162400 10.0kb upstream 10.0kb upstream 14786 true Chr04: 51161862-51176647 Sorghum bicolor
Sobic.004G162400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 51161862-51171861 Sorghum bicolor
Sobic.004G162400 10.0kb downstream 10.0kb downstream 14786 true Chr04: 51171862-51186647 Sorghum bicolor
Sobic.004G162400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 51176648-51186647 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041323 5273 Angiosperm View MSA
122185064 5267 Panicoideae View MSA
124572283 5269 Grass View MSA
121345985 5274 Embryophyte View MSA
123426532 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.541       Low
cufflinks 6.268       Low
cufflinks 58.748     High High
cufflinks 38.962     High  
cufflinks 17.922     High  
cufflinks 74.714     High High
cufflinks 12.464     High  
cufflinks 15.85     High  
cufflinks 26.131     High  
cufflinks 31.786     High  
cufflinks 37.613     High  
cufflinks 17.732     High  
cufflinks 44.428     High High
cufflinks 13.325     High  
cufflinks 33.619     High  
cufflinks 16.383     High  
cufflinks 15.573     High  
cufflinks 12.115     High  
cufflinks 38.905     High  
cufflinks 28.666     High  
cufflinks 9.047       Low
cufflinks 6.39       Low
cufflinks 15.83     High  
cufflinks 12.312     High  
cufflinks 22.047     High  
cufflinks 12.059     High  
cufflinks 48.01     High High
cufflinks 18.477     High  
cufflinks 12.279     High  
cufflinks 22.671     High  

0 Strain