Gene : Sobic.009G032500 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR14732:SF0 - RNA POLYMERASE II SUBUNIT B1 CTD PHOSPHATASE RPAP2-RELATED Genomic Order:  330
Name:  ? Sobic.009G032500 Secondary Identifier:  ? PAC:37919094
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G032500 0.5kb upstream 0.5kb upstream 5119 true Chr09: 2931348-2936466 Sorghum bicolor
Sobic.009G032500 0.5kb upstream 0.5kb upstream 500 false Chr09: 2935967-2936466 Sorghum bicolor
Sobic.009G032500 0.5kb downstream 0.5kb downstream 5119 true Chr09: 2930848-2935966 Sorghum bicolor
Sobic.009G032500 0.5kb downstream 0.5kb downstream 500 false Chr09: 2930848-2931347 Sorghum bicolor
Sobic.009G032500 1.0kb upstream 1.0kb upstream 5619 true Chr09: 2931348-2936966 Sorghum bicolor
Sobic.009G032500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 2935967-2936966 Sorghum bicolor
Sobic.009G032500 1.0kb downstream 1.0kb downstream 5619 true Chr09: 2930348-2935966 Sorghum bicolor
Sobic.009G032500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 2930348-2931347 Sorghum bicolor
Sobic.009G032500 2.0kb upstream 2.0kb upstream 6619 true Chr09: 2931348-2937966 Sorghum bicolor
Sobic.009G032500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 2935967-2937966 Sorghum bicolor
Sobic.009G032500 2.0kb downstream 2.0kb downstream 6619 true Chr09: 2929348-2935966 Sorghum bicolor
Sobic.009G032500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 2929348-2931347 Sorghum bicolor
Sobic.009G032500 5.0kb upstream 5.0kb upstream 9619 true Chr09: 2931348-2940966 Sorghum bicolor
Sobic.009G032500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 2935967-2940966 Sorghum bicolor
Sobic.009G032500 5.0kb downstream 5.0kb downstream 9619 true Chr09: 2926348-2935966 Sorghum bicolor
Sobic.009G032500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 2926348-2931347 Sorghum bicolor
Sobic.009G032500 10.0kb upstream 10.0kb upstream 14619 true Chr09: 2931348-2945966 Sorghum bicolor
Sobic.009G032500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 2935967-2945966 Sorghum bicolor
Sobic.009G032500 10.0kb downstream 10.0kb downstream 14619 true Chr09: 2921348-2935966 Sorghum bicolor
Sobic.009G032500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 2921348-2931347 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175553 5267 Panicoideae View MSA
124572985 5269 Grass View MSA
122046248 5273 Angiosperm View MSA
121347996 5274 Embryophyte View MSA
123426503 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.582     High High
cufflinks 1.333       Low
cufflinks 3.446        
cufflinks 4.456        
cufflinks 4.388        
cufflinks 3.742        
cufflinks 3.051        
cufflinks 1.869       Low
cufflinks 4.984        
cufflinks 5.891        
cufflinks 4.365        
cufflinks 6.025        
cufflinks 4.634        
cufflinks 5.426        
cufflinks 4.405        
cufflinks 2.954        
cufflinks 3.418        
cufflinks 3.304        
cufflinks 2.89        
cufflinks 3.886        
cufflinks 10.664       High
cufflinks 4.548        
cufflinks 5.706        
cufflinks 5.375        
cufflinks 2.153       Low
cufflinks 1.795       Low
cufflinks 3.947        
cufflinks 13.374     High High
cufflinks 2.343       Low
cufflinks 5.504        

0 Strain