Gene : Sobic.004G241000 S. bicolor v3.1.1
Defline:  (1 of 19) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2512
Name:  ? Sobic.004G241000 Secondary Identifier:  ? PAC:37932716
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G241000 0.5kb upstream 0.5kb upstream 5472 true Chr04: 58925932-58931403 Sorghum bicolor
Sobic.004G241000 0.5kb upstream 0.5kb upstream 500 false Chr04: 58925932-58926431 Sorghum bicolor
Sobic.004G241000 0.5kb downstream 0.5kb downstream 5472 true Chr04: 58926432-58931903 Sorghum bicolor
Sobic.004G241000 0.5kb downstream 0.5kb downstream 500 false Chr04: 58931404-58931903 Sorghum bicolor
Sobic.004G241000 1.0kb upstream 1.0kb upstream 5972 true Chr04: 58925432-58931403 Sorghum bicolor
Sobic.004G241000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 58925432-58926431 Sorghum bicolor
Sobic.004G241000 1.0kb downstream 1.0kb downstream 5972 true Chr04: 58926432-58932403 Sorghum bicolor
Sobic.004G241000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 58931404-58932403 Sorghum bicolor
Sobic.004G241000 2.0kb upstream 2.0kb upstream 6972 true Chr04: 58924432-58931403 Sorghum bicolor
Sobic.004G241000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 58924432-58926431 Sorghum bicolor
Sobic.004G241000 2.0kb downstream 2.0kb downstream 6972 true Chr04: 58926432-58933403 Sorghum bicolor
Sobic.004G241000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 58931404-58933403 Sorghum bicolor
Sobic.004G241000 5.0kb upstream 5.0kb upstream 9972 true Chr04: 58921432-58931403 Sorghum bicolor
Sobic.004G241000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 58921432-58926431 Sorghum bicolor
Sobic.004G241000 5.0kb downstream 5.0kb downstream 9972 true Chr04: 58926432-58936403 Sorghum bicolor
Sobic.004G241000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 58931404-58936403 Sorghum bicolor
Sobic.004G241000 10.0kb upstream 10.0kb upstream 14972 true Chr04: 58916432-58931403 Sorghum bicolor
Sobic.004G241000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 58916432-58926431 Sorghum bicolor
Sobic.004G241000 10.0kb downstream 10.0kb downstream 14972 true Chr04: 58926432-58941403 Sorghum bicolor
Sobic.004G241000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 58931404-58941403 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196602 5267 Panicoideae View MSA
124585163 5269 Grass View MSA
122048876 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.785       High
cufflinks 0.018     Low Low
cufflinks 0.137        
cufflinks 0.137        
cufflinks 0.522        
cufflinks 0.33        
cufflinks 0.173        
cufflinks 0.025     Low Low
cufflinks 0.369        
cufflinks 0.358        
cufflinks 0.347        
cufflinks 0.424        
cufflinks 0.284        
cufflinks 0.261        
cufflinks 0.337        
cufflinks 0.078     Low Low
cufflinks 0.271        
cufflinks 0.295        
cufflinks 0.052     Low Low
cufflinks 0.161        
cufflinks 0.725       High
cufflinks 0.439        
cufflinks 0.371        
cufflinks 0.377        
cufflinks 0.05     Low Low
cufflinks 0.015     Low Low
cufflinks 0.27        
cufflinks 0.103        
cufflinks 0.195        
cufflinks 0.537        

0 Strain