Gene : Sobic.004G296000 S. bicolor v3.1.1
Defline:  (1 of 1) 2.7.1.138 - Ceramide kinase / Acylsphingosine kinase Genomic Order:  3104
Name:  ? Sobic.004G296000 Secondary Identifier:  ? PAC:37929211
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5129 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G296000 0.5kb upstream 0.5kb upstream 8060 true Chr04: 63577587-63585646 Sorghum bicolor
Sobic.004G296000 0.5kb upstream 0.5kb upstream 500 false Chr04: 63577587-63578086 Sorghum bicolor
Sobic.004G296000 0.5kb downstream 0.5kb downstream 8060 true Chr04: 63578087-63586146 Sorghum bicolor
Sobic.004G296000 0.5kb downstream 0.5kb downstream 500 false Chr04: 63585647-63586146 Sorghum bicolor
Sobic.004G296000 1.0kb upstream 1.0kb upstream 8560 true Chr04: 63577087-63585646 Sorghum bicolor
Sobic.004G296000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 63577087-63578086 Sorghum bicolor
Sobic.004G296000 1.0kb downstream 1.0kb downstream 8560 true Chr04: 63578087-63586646 Sorghum bicolor
Sobic.004G296000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 63585647-63586646 Sorghum bicolor
Sobic.004G296000 2.0kb upstream 2.0kb upstream 9560 true Chr04: 63576087-63585646 Sorghum bicolor
Sobic.004G296000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 63576087-63578086 Sorghum bicolor
Sobic.004G296000 2.0kb downstream 2.0kb downstream 9560 true Chr04: 63578087-63587646 Sorghum bicolor
Sobic.004G296000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 63585647-63587646 Sorghum bicolor
Sobic.004G296000 5.0kb upstream 5.0kb upstream 12560 true Chr04: 63573087-63585646 Sorghum bicolor
Sobic.004G296000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 63573087-63578086 Sorghum bicolor
Sobic.004G296000 5.0kb downstream 5.0kb downstream 12560 true Chr04: 63578087-63590646 Sorghum bicolor
Sobic.004G296000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 63585647-63590646 Sorghum bicolor
Sobic.004G296000 10.0kb upstream 10.0kb upstream 17560 true Chr04: 63568087-63585646 Sorghum bicolor
Sobic.004G296000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 63568087-63578086 Sorghum bicolor
Sobic.004G296000 10.0kb downstream 10.0kb downstream 17560 true Chr04: 63578087-63595646 Sorghum bicolor
Sobic.004G296000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 63585647-63595646 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188498 5267 Panicoideae View MSA
124580851 5269 Grass View MSA
122045057 5273 Angiosperm View MSA
121345163 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.857        
cufflinks 0.265       Low
cufflinks 0.127       Low
cufflinks 0.815        
cufflinks 2.268       High
cufflinks 0.397       Low
cufflinks 0.701        
cufflinks 0.738        
cufflinks 2.355       High
cufflinks 2.701       High
cufflinks 0.967        
cufflinks 1.009        
cufflinks 0.919        
cufflinks 1.257        
cufflinks 1.271        
cufflinks 0.261       Low
cufflinks 0.726        
cufflinks 0.658        
cufflinks 0.329       Low
cufflinks 1.106        
cufflinks 2.506       High
cufflinks 1.025        
cufflinks 0.909        
cufflinks 0.893        
cufflinks 0.31       Low
cufflinks 0.331       Low
cufflinks 0.722        
cufflinks 0.676        
cufflinks 1.009        
cufflinks 1.304        

0 Strain