Gene : Sobic.009G217200 S. bicolor v3.1.1
Defline:  (1 of 1) K02999 - DNA-directed RNA polymerase I subunit RPA1 (RPA1, POLR1A) Genomic Order:  2247
Name:  ? Sobic.009G217200 Secondary Identifier:  ? PAC:37919941
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G217200 0.5kb upstream 0.5kb upstream 20182 true Chr09: 56146149-56166330 Sorghum bicolor
Sobic.009G217200 0.5kb upstream 0.5kb upstream 500 false Chr09: 56146149-56146648 Sorghum bicolor
Sobic.009G217200 0.5kb downstream 0.5kb downstream 20182 true Chr09: 56146649-56166830 Sorghum bicolor
Sobic.009G217200 0.5kb downstream 0.5kb downstream 500 false Chr09: 56166331-56166830 Sorghum bicolor
Sobic.009G217200 1.0kb upstream 1.0kb upstream 20682 true Chr09: 56145649-56166330 Sorghum bicolor
Sobic.009G217200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 56145649-56146648 Sorghum bicolor
Sobic.009G217200 1.0kb downstream 1.0kb downstream 20682 true Chr09: 56146649-56167330 Sorghum bicolor
Sobic.009G217200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 56166331-56167330 Sorghum bicolor
Sobic.009G217200 2.0kb upstream 2.0kb upstream 21682 true Chr09: 56144649-56166330 Sorghum bicolor
Sobic.009G217200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 56144649-56146648 Sorghum bicolor
Sobic.009G217200 2.0kb downstream 2.0kb downstream 21682 true Chr09: 56146649-56168330 Sorghum bicolor
Sobic.009G217200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 56166331-56168330 Sorghum bicolor
Sobic.009G217200 5.0kb upstream 5.0kb upstream 24682 true Chr09: 56141649-56166330 Sorghum bicolor
Sobic.009G217200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 56141649-56146648 Sorghum bicolor
Sobic.009G217200 5.0kb downstream 5.0kb downstream 24682 true Chr09: 56146649-56171330 Sorghum bicolor
Sobic.009G217200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 56166331-56171330 Sorghum bicolor
Sobic.009G217200 10.0kb upstream 10.0kb upstream 29682 true Chr09: 56136649-56166330 Sorghum bicolor
Sobic.009G217200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 56136649-56146648 Sorghum bicolor
Sobic.009G217200 10.0kb downstream 10.0kb downstream 29682 true Chr09: 56146649-56176330 Sorghum bicolor
Sobic.009G217200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 56166331-56176330 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194054 5267 Panicoideae View MSA
124585532 5269 Grass View MSA
122045680 5273 Angiosperm View MSA
121344248 5274 Embryophyte View MSA
123424891 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.439        
cufflinks 0.104       Low
cufflinks 0.453        
cufflinks 0.858        
cufflinks 2.575        
cufflinks 1.112        
cufflinks 0.966        
cufflinks 0.172       Low
cufflinks 1.47        
cufflinks 1.28        
cufflinks 2.168        
cufflinks 2.231        
cufflinks 0.814        
cufflinks 2.091        
cufflinks 1.021        
cufflinks 0.215       Low
cufflinks 0.969        
cufflinks 1.1        
cufflinks 0.365       Low
cufflinks 0.814        
cufflinks 4.679       High
cufflinks 2.505        
cufflinks 2.475        
cufflinks 2.757        
cufflinks 0.288       Low
cufflinks 0.095       Low
cufflinks 1.609        
cufflinks 2.334        
cufflinks 0.786        
cufflinks 1.941        

0 Strain