Gene : Sobic.004G317700 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11946:SF82 - ISOLEUCINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  3335
Name:  ? Sobic.004G317700 Secondary Identifier:  ? PAC:37928900
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRNA-CHARGING-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G317700 0.5kb upstream 0.5kb upstream 11317 true Chr04: 65352624-65363940 Sorghum bicolor
Sobic.004G317700 0.5kb upstream 0.5kb upstream 500 false Chr04: 65352624-65353123 Sorghum bicolor
Sobic.004G317700 0.5kb downstream 0.5kb downstream 11317 true Chr04: 65353124-65364440 Sorghum bicolor
Sobic.004G317700 0.5kb downstream 0.5kb downstream 500 false Chr04: 65363941-65364440 Sorghum bicolor
Sobic.004G317700 1.0kb upstream 1.0kb upstream 11817 true Chr04: 65352124-65363940 Sorghum bicolor
Sobic.004G317700 1.0kb upstream 1.0kb upstream 1000 false Chr04: 65352124-65353123 Sorghum bicolor
Sobic.004G317700 1.0kb downstream 1.0kb downstream 11817 true Chr04: 65353124-65364940 Sorghum bicolor
Sobic.004G317700 1.0kb downstream 1.0kb downstream 1000 false Chr04: 65363941-65364940 Sorghum bicolor
Sobic.004G317700 2.0kb upstream 2.0kb upstream 12817 true Chr04: 65351124-65363940 Sorghum bicolor
Sobic.004G317700 2.0kb upstream 2.0kb upstream 2000 false Chr04: 65351124-65353123 Sorghum bicolor
Sobic.004G317700 2.0kb downstream 2.0kb downstream 12817 true Chr04: 65353124-65365940 Sorghum bicolor
Sobic.004G317700 2.0kb downstream 2.0kb downstream 2000 false Chr04: 65363941-65365940 Sorghum bicolor
Sobic.004G317700 5.0kb upstream 5.0kb upstream 15817 true Chr04: 65348124-65363940 Sorghum bicolor
Sobic.004G317700 5.0kb upstream 5.0kb upstream 5000 false Chr04: 65348124-65353123 Sorghum bicolor
Sobic.004G317700 5.0kb downstream 5.0kb downstream 15817 true Chr04: 65353124-65368940 Sorghum bicolor
Sobic.004G317700 5.0kb downstream 5.0kb downstream 5000 false Chr04: 65363941-65368940 Sorghum bicolor
Sobic.004G317700 10.0kb upstream 10.0kb upstream 20817 true Chr04: 65343124-65363940 Sorghum bicolor
Sobic.004G317700 10.0kb upstream 10.0kb upstream 10000 false Chr04: 65343124-65353123 Sorghum bicolor
Sobic.004G317700 10.0kb downstream 10.0kb downstream 20817 true Chr04: 65353124-65373940 Sorghum bicolor
Sobic.004G317700 10.0kb downstream 10.0kb downstream 10000 false Chr04: 65363941-65373940 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185947 5267 Panicoideae View MSA
124573656 5269 Grass View MSA
122042566 5273 Angiosperm View MSA
121346634 5274 Embryophyte View MSA
123424788 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.448       Low
cufflinks 47.411     High High
cufflinks 31.893     High High
cufflinks 16.437     High  
cufflinks 11.627        
cufflinks 14.275     High  
cufflinks 32.538     High High
cufflinks 38.561     High High
cufflinks 12.948     High  
cufflinks 12.892     High  
cufflinks 5.734       Low
cufflinks 7.09        
cufflinks 11.761     High  
cufflinks 5.233       Low
cufflinks 13.547     High  
cufflinks 35.914     High High
cufflinks 29.081     High High
cufflinks 32.564     High High
cufflinks 23.839     High  
cufflinks 23.595     High  
cufflinks 13.966        
cufflinks 6.281        
cufflinks 5.78       Low
cufflinks 6.215        
cufflinks 24.98     High  
cufflinks 43.173     High High
cufflinks 8.751        
cufflinks 3.441       Low
cufflinks 37.19     High High
cufflinks 15.068     High  

0 Strain