Gene : Sobic.009G180200 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR10343//PTHR10343:SF51 - 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT // SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 Genomic Order:  1863
Name:  ? Sobic.009G180200 Secondary Identifier:  ? PAC:37921844
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G180200 0.5kb upstream 0.5kb upstream 4099 true Chr09: 53444979-53449077 Sorghum bicolor
Sobic.009G180200 0.5kb upstream 0.5kb upstream 500 false Chr09: 53448578-53449077 Sorghum bicolor
Sobic.009G180200 0.5kb downstream 0.5kb downstream 4099 true Chr09: 53444479-53448577 Sorghum bicolor
Sobic.009G180200 0.5kb downstream 0.5kb downstream 500 false Chr09: 53444479-53444978 Sorghum bicolor
Sobic.009G180200 1.0kb upstream 1.0kb upstream 4599 true Chr09: 53444979-53449577 Sorghum bicolor
Sobic.009G180200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 53448578-53449577 Sorghum bicolor
Sobic.009G180200 1.0kb downstream 1.0kb downstream 4599 true Chr09: 53443979-53448577 Sorghum bicolor
Sobic.009G180200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 53443979-53444978 Sorghum bicolor
Sobic.009G180200 2.0kb upstream 2.0kb upstream 5599 true Chr09: 53444979-53450577 Sorghum bicolor
Sobic.009G180200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 53448578-53450577 Sorghum bicolor
Sobic.009G180200 2.0kb downstream 2.0kb downstream 5599 true Chr09: 53442979-53448577 Sorghum bicolor
Sobic.009G180200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 53442979-53444978 Sorghum bicolor
Sobic.009G180200 5.0kb upstream 5.0kb upstream 8599 true Chr09: 53444979-53453577 Sorghum bicolor
Sobic.009G180200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 53448578-53453577 Sorghum bicolor
Sobic.009G180200 5.0kb downstream 5.0kb downstream 8599 true Chr09: 53439979-53448577 Sorghum bicolor
Sobic.009G180200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 53439979-53444978 Sorghum bicolor
Sobic.009G180200 10.0kb upstream 10.0kb upstream 13599 true Chr09: 53444979-53458577 Sorghum bicolor
Sobic.009G180200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 53448578-53458577 Sorghum bicolor
Sobic.009G180200 10.0kb downstream 10.0kb downstream 13599 true Chr09: 53434979-53448577 Sorghum bicolor
Sobic.009G180200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 53434979-53444978 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191676 5267 Panicoideae View MSA
124571028 5269 Grass View MSA
122041753 5273 Angiosperm View MSA
121345261 5274 Embryophyte View MSA
123426874 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.039        
cufflinks 0.641       Low
cufflinks 1.277        
cufflinks 1.691        
cufflinks 5.206        
cufflinks 2.786        
cufflinks 1.007       Low
cufflinks 2.033        
cufflinks 3.201        
cufflinks 2.775        
cufflinks 4.572        
cufflinks 2.472        
cufflinks 1.419        
cufflinks 5.665       High
cufflinks 2.32        
cufflinks 5.848       High
cufflinks 1.098       Low
cufflinks 1.152       Low
cufflinks 6.23       High
cufflinks 1.002       Low
cufflinks 11.908       High
cufflinks 5.493        
cufflinks 1.732        
cufflinks 1.743        
cufflinks 1.723        
cufflinks 1.418        
cufflinks 3.185        
cufflinks 15.931     High High
cufflinks 1.882        
cufflinks 2.965        

0 Strain