Gene : Sobic.004G331700 S. bicolor v3.1.1
Defline:  (1 of 1) K00811 - aspartate aminotransferase, chloroplastic (ASP5) Genomic Order:  3481
Name:  ? Sobic.004G331700 Secondary Identifier:  ? PAC:37933732
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Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ASPARTATE-DEG1-PWY Sorghum bicolor pathologic  
Sbicolor ASPARTATESYN-PWY Sorghum bicolor pathologic  
Sbicolor PWY-3001 Sorghum bicolor pathologic  
Sbicolor PWY-7115 Sorghum bicolor pathologic  
Sbicolor PWY-7117 Sorghum bicolor pathologic  
Sbicolor THRESYN-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G331700 0.5kb upstream 0.5kb upstream 4575 true Chr04: 66479517-66484091 Sorghum bicolor
Sobic.004G331700 0.5kb upstream 0.5kb upstream 500 false Chr04: 66479517-66480016 Sorghum bicolor
Sobic.004G331700 0.5kb downstream 0.5kb downstream 4575 true Chr04: 66480017-66484591 Sorghum bicolor
Sobic.004G331700 0.5kb downstream 0.5kb downstream 500 false Chr04: 66484092-66484591 Sorghum bicolor
Sobic.004G331700 1.0kb upstream 1.0kb upstream 5075 true Chr04: 66479017-66484091 Sorghum bicolor
Sobic.004G331700 1.0kb upstream 1.0kb upstream 1000 false Chr04: 66479017-66480016 Sorghum bicolor
Sobic.004G331700 1.0kb downstream 1.0kb downstream 5075 true Chr04: 66480017-66485091 Sorghum bicolor
Sobic.004G331700 1.0kb downstream 1.0kb downstream 1000 false Chr04: 66484092-66485091 Sorghum bicolor
Sobic.004G331700 2.0kb upstream 2.0kb upstream 6075 true Chr04: 66478017-66484091 Sorghum bicolor
Sobic.004G331700 2.0kb upstream 2.0kb upstream 2000 false Chr04: 66478017-66480016 Sorghum bicolor
Sobic.004G331700 2.0kb downstream 2.0kb downstream 6075 true Chr04: 66480017-66486091 Sorghum bicolor
Sobic.004G331700 2.0kb downstream 2.0kb downstream 2000 false Chr04: 66484092-66486091 Sorghum bicolor
Sobic.004G331700 5.0kb upstream 5.0kb upstream 9075 true Chr04: 66475017-66484091 Sorghum bicolor
Sobic.004G331700 5.0kb upstream 5.0kb upstream 5000 false Chr04: 66475017-66480016 Sorghum bicolor
Sobic.004G331700 5.0kb downstream 5.0kb downstream 9075 true Chr04: 66480017-66489091 Sorghum bicolor
Sobic.004G331700 5.0kb downstream 5.0kb downstream 5000 false Chr04: 66484092-66489091 Sorghum bicolor
Sobic.004G331700 10.0kb upstream 10.0kb upstream 14075 true Chr04: 66470017-66484091 Sorghum bicolor
Sobic.004G331700 10.0kb upstream 10.0kb upstream 10000 false Chr04: 66470017-66480016 Sorghum bicolor
Sobic.004G331700 10.0kb downstream 10.0kb downstream 14075 true Chr04: 66480017-66494091 Sorghum bicolor
Sobic.004G331700 10.0kb downstream 10.0kb downstream 10000 false Chr04: 66484092-66494091 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175651 5267 Panicoideae View MSA
124572981 5269 Grass View MSA
122048100 5273 Angiosperm View MSA
121346908 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.395     High  
cufflinks 238.567     High High
cufflinks 158.289     High High
cufflinks 84.468     High  
cufflinks 6.253       Low
cufflinks 48.364     High  
cufflinks 82.293     High  
cufflinks 143.569     High High
cufflinks 14.424     High  
cufflinks 12.645     High  
cufflinks 9.228        
cufflinks 8.383        
cufflinks 17.01     High  
cufflinks 12.995     High  
cufflinks 43.949     High  
cufflinks 161.623     High High
cufflinks 72.92     High  
cufflinks 95.318     High High
cufflinks 117.404     High High
cufflinks 53.839     High  
cufflinks 3.679       Low
cufflinks 12.426     High  
cufflinks 13.58     High  
cufflinks 13.544     High  
cufflinks 116.546     High High
cufflinks 202.343     High High
cufflinks 5.788       Low
cufflinks 2.2       Low
cufflinks 96.422     High High
cufflinks 29.739     High  

0 Strain