Gene : Sobic.010G022000 S. bicolor v3.1.1
Defline:  (1 of 1) 3.7.1.9 - 2-hydroxymuconate-6-semialdehyde hydrolase / 2-hydroxymuconate-semialdehyde hydrolase Genomic Order:  218
Name:  ? Sobic.010G022000 Secondary Identifier:  ? PAC:37909844
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G022000 0.5kb upstream 0.5kb upstream 4990   true Chr10: 1794970-1799959 Sorghum bicolor
Sobic.010G022000 0.5kb upstream 0.5kb upstream 500   false Chr10: 1794970-1795469 Sorghum bicolor
Sobic.010G022000 0.5kb downstream 0.5kb downstream 4990   true Chr10: 1795470-1800459 Sorghum bicolor
Sobic.010G022000 0.5kb downstream 0.5kb downstream 500   false Chr10: 1799960-1800459 Sorghum bicolor
Sobic.010G022000 1.0kb upstream 1.0kb upstream 5490   true Chr10: 1794470-1799959 Sorghum bicolor
Sobic.010G022000 1.0kb upstream 1.0kb upstream 1000   false Chr10: 1794470-1795469 Sorghum bicolor
Sobic.010G022000 1.0kb downstream 1.0kb downstream 5490   true Chr10: 1795470-1800959 Sorghum bicolor
Sobic.010G022000 1.0kb downstream 1.0kb downstream 1000   false Chr10: 1799960-1800959 Sorghum bicolor
Sobic.010G022000 2.0kb upstream 2.0kb upstream 6490   true Chr10: 1793470-1799959 Sorghum bicolor
Sobic.010G022000 2.0kb upstream 2.0kb upstream 2000   false Chr10: 1793470-1795469 Sorghum bicolor
Sobic.010G022000 2.0kb downstream 2.0kb downstream 6490   true Chr10: 1795470-1801959 Sorghum bicolor
Sobic.010G022000 2.0kb downstream 2.0kb downstream 2000   false Chr10: 1799960-1801959 Sorghum bicolor
Sobic.010G022000 5.0kb upstream 5.0kb upstream 9490   true Chr10: 1790470-1799959 Sorghum bicolor
Sobic.010G022000 5.0kb upstream 5.0kb upstream 5000   false Chr10: 1790470-1795469 Sorghum bicolor
Sobic.010G022000 5.0kb downstream 5.0kb downstream 9490   true Chr10: 1795470-1804959 Sorghum bicolor
Sobic.010G022000 5.0kb downstream 5.0kb downstream 5000   false Chr10: 1799960-1804959 Sorghum bicolor
Sobic.010G022000 10.0kb upstream 10.0kb upstream 14490   true Chr10: 1785470-1799959 Sorghum bicolor
Sobic.010G022000 10.0kb upstream 10.0kb upstream 10000   false Chr10: 1785470-1795469 Sorghum bicolor
Sobic.010G022000 10.0kb downstream 10.0kb downstream 14490   true Chr10: 1795470-1809959 Sorghum bicolor
Sobic.010G022000 10.0kb downstream 10.0kb downstream 10000   false Chr10: 1799960-1809959 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041325 5273 Angiosperm View MSA
122175926 5267 Panicoideae View MSA
124568352 5269 Grass View MSA
121349939 5274 Embryophyte View MSA
123428460 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.671        
cufflinks 0.051        
cufflinks 0.003     Low Low
cufflinks 0.022     Low Low
cufflinks 0.227        
cufflinks 0.502        
cufflinks 4.239       High
cufflinks 0.563        
cufflinks 0.051     Low  
cufflinks 0.061     Low  
cufflinks 0.807        
cufflinks 3.185       High
cufflinks 0.637        
cufflinks 2.001        
cufflinks 2.096        
cufflinks 0.014     Low Low
cufflinks 4.88       High
cufflinks 3.833       High
cufflinks 0.025     Low Low
cufflinks 3.924       High
cufflinks 0.017     Low Low
cufflinks 0.177        
cufflinks 1.734        
cufflinks 1.283        
cufflinks 0.027     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.212        
cufflinks 0.014     Low Low
cufflinks 7.867       High
cufflinks 2.388        

0 Strain