Gene : Sobic.010G047000 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR20902//PTHR20902:SF0 - 41-2 PROTEIN ANTIGEN-RELATED // TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 5 Genomic Order:  474
Name:  ? Sobic.010G047000 Secondary Identifier:  ? PAC:37908975
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G047000 0.5kb upstream 0.5kb upstream 5919   true Chr10: 3650450-3656368 Sorghum bicolor
Sobic.010G047000 0.5kb upstream 0.5kb upstream 500   false Chr10: 3650450-3650949 Sorghum bicolor
Sobic.010G047000 0.5kb downstream 0.5kb downstream 5919   true Chr10: 3650950-3656868 Sorghum bicolor
Sobic.010G047000 0.5kb downstream 0.5kb downstream 500   false Chr10: 3656369-3656868 Sorghum bicolor
Sobic.010G047000 1.0kb upstream 1.0kb upstream 6419   true Chr10: 3649950-3656368 Sorghum bicolor
Sobic.010G047000 1.0kb upstream 1.0kb upstream 1000   false Chr10: 3649950-3650949 Sorghum bicolor
Sobic.010G047000 1.0kb downstream 1.0kb downstream 6419   true Chr10: 3650950-3657368 Sorghum bicolor
Sobic.010G047000 1.0kb downstream 1.0kb downstream 1000   false Chr10: 3656369-3657368 Sorghum bicolor
Sobic.010G047000 2.0kb upstream 2.0kb upstream 7419   true Chr10: 3648950-3656368 Sorghum bicolor
Sobic.010G047000 2.0kb upstream 2.0kb upstream 2000   false Chr10: 3648950-3650949 Sorghum bicolor
Sobic.010G047000 2.0kb downstream 2.0kb downstream 7419   true Chr10: 3650950-3658368 Sorghum bicolor
Sobic.010G047000 2.0kb downstream 2.0kb downstream 2000   false Chr10: 3656369-3658368 Sorghum bicolor
Sobic.010G047000 5.0kb upstream 5.0kb upstream 10419   true Chr10: 3645950-3656368 Sorghum bicolor
Sobic.010G047000 5.0kb upstream 5.0kb upstream 5000   false Chr10: 3645950-3650949 Sorghum bicolor
Sobic.010G047000 5.0kb downstream 5.0kb downstream 10419   true Chr10: 3650950-3661368 Sorghum bicolor
Sobic.010G047000 5.0kb downstream 5.0kb downstream 5000   false Chr10: 3656369-3661368 Sorghum bicolor
Sobic.010G047000 10.0kb upstream 10.0kb upstream 15419   true Chr10: 3640950-3656368 Sorghum bicolor
Sobic.010G047000 10.0kb upstream 10.0kb upstream 10000   false Chr10: 3640950-3650949 Sorghum bicolor
Sobic.010G047000 10.0kb downstream 10.0kb downstream 15419   true Chr10: 3650950-3666368 Sorghum bicolor
Sobic.010G047000 10.0kb downstream 10.0kb downstream 10000   false Chr10: 3656369-3666368 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122147042 5267 Panicoideae Singleton cluster - no MSA
124439749 5269 Grass Singleton cluster - no MSA
122045467 5273 Angiosperm View MSA
121344565 5274 Embryophyte View MSA
123425941 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.349        
cufflinks 0.943       Low
cufflinks 3.473        
cufflinks 6.535        
cufflinks 5.517        
cufflinks 6.081        
cufflinks 5.012        
cufflinks 2.028       Low
cufflinks 8.374        
cufflinks 7.998        
cufflinks 4.95        
cufflinks 5.317        
cufflinks 7.787        
cufflinks 6.14        
cufflinks 6.104        
cufflinks 2.638        
cufflinks 6.221        
cufflinks 6.426        
cufflinks 2.61        
cufflinks 8.306        
cufflinks 5.484        
cufflinks 7.921        
cufflinks 7.256        
cufflinks 6.651        
cufflinks 1.77       Low
cufflinks 0.811       Low
cufflinks 6.334        
cufflinks 0.65       Low
cufflinks 5.766        
cufflinks 7.533        

0 Strain